Browse Element(s) Details


OsAffx.16712.1.S1_at

Description tigr:9635.m04489
TID=OsAffx.16712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4468011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed
LOC_Os07g44660Os.16887.1.S1_at11/117+26638972..26643649xylulose kinase, putative, expressed
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein
LOC_Os07g44690Os.50643.2.S1_x_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44690Os.50643.1.S1_a_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44700Os.53916.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44700OsAffx.25220.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16712.1.S1_at--383--5611Chr07:26661024..26661045 (22 bp)
GACAAGATGGCAAGGCCGGCAGTTT
LOC_Os07g44680
OsAffx.16712.1.S1_at--595--2951Chr07:26660784..26661034 (25 bp)
AAGGCCGGCAGTTTCCAAACATGTT
LOC_Os07g44680
OsAffx.16712.1.S1_at--78--5031Chr07:26660777..26660800 (24 bp)
GCAGTTTCCAAACATGTTGCAGAAT
LOC_Os07g44680
OsAffx.16712.1.S1_at--493--2171Chr07:26660748..26660771 (24 bp)
ACACTGAACAACAAGATTATAAGGC
LOC_Os07g44680
OsAffx.16712.1.S1_at--781--9771Chr07:26660528..26660551 (24 bp)
TAAGGCTATATCATTGCTGGCCATA
LOC_Os07g44680
OsAffx.16712.1.S1_at--1064--8291Chr07:26660525..26660549 (25 bp)
GGCTATATCATTGCTGGCCATACTG
LOC_Os07g44680
OsAffx.16712.1.S1_at--656--9131Chr07:26660514..26660538 (25 bp)
TGCTGGCCATACTGATAGAGGTTGT
LOC_Os07g44680
OsAffx.16712.1.S1_at--489--4431Chr07:26660509..26660533 (25 bp)
GCCATACTGATAGAGGTTGTGTTAC
LOC_Os07g44680
OsAffx.16712.1.S1_at--815--7891Chr07:26660495..26660519 (25 bp)
GGTTGTGTTACCTGAAAGGTTGTCA
LOC_Os07g44680
OsAffx.16712.1.S1_at--1122--7891Chr07:26660478..26660502 (25 bp)
GGTTGTCAGAGGACACAAACCAACT
LOC_Os07g44680
OsAffx.16712.1.S1_at--713--8131Chr07:26660468..26660492 (25 bp)
GGACACAAACCAACTGTCACGCCGA
LOC_Os07g44680
Target Sequence 
GACAAGATGGCAAGGCCGGCAGTTTCCAAACATGTTGCAGAATGAAGAACACTGAACAACAAGATTATAAGGCTATATCA
TTGCTGGCCATACTGATAGAGGTTGTGTTACCTGAAAGGTTGTCAGAGGACACAAACCAACTGTCACGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis