Browse Element(s) Details


Os.50643.1.S1_a_at

Description gb:AY344494.1
DB_XREF= gi:33591117
TID=Os.50643.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50643 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
PROD=heat shock factor RHSF12
FL= gb:AK063952.1 gb:AK099354.1 gb:AY344494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4469011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein
LOC_Os07g44690Os.50643.2.S1_x_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44690Os.50643.1.S1_a_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44700Os.53916.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44700OsAffx.25220.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50643.1.S1_a_at--72--4471Chr07:26674478..26674502 (25 bp)
GCCTCCTGCAGGCTGATGGAGCTCG
LOC_Os07g44690
Os.50643.1.S1_a_at--583--3231Chr07:26674537..26674561 (25 bp)
CAAGACTCCAGCAACCGACGGCGGC
LOC_Os07g44690
Os.50643.1.S1_a_at--503--2691Chr07:26674571..26674595 (25 bp)
AAGCTGTTCGGCGTGTCGCTGCACG
LOC_Os07g44690
Os.50643.1.S1_a_at--22--4671Chr07:26674581..26674605 (25 bp)
GCGTGTCGCTGCACGGCAGGAAGAA
LOC_Os07g44690
Os.50643.1.S1_a_at--238--1931Chr07:26674629..26674653 (25 bp)
ACGGCGTCCATGACCAGGGAAGCGA
LOC_Os07g44690
Os.50643.1.S1_a_at--152--7471Chr07:26674655..26674679 (25 bp)
GTGTGAGCGAGCTTTGCAGCCGCCA
LOC_Os07g44690
Os.50643.1.S1_a_at--975--10271Chr07:26674667..26674691 (25 bp)
TTTGCAGCCGCCATGCTTGCTCGAT
LOC_Os07g44690
Os.50643.1.S1_a_at--416--631Chr07:26674679..26674703 (25 bp)
ATGCTTGCTCGATCTCGTGTACATA
LOC_Os07g44690
Os.50643.1.S1_a_at--98--4931Chr07:26674681..26674705 (25 bp)
GCTTGCTCGATCTCGTGTACATATA
LOC_Os07g44690
Os.50643.1.S1_a_at--1151--191Chr07:26674802..26674826 (25 bp)
ATTTGCGCAAGGGTGCAGGTGTTAA
LOC_Os07g44690
Os.50643.1.S1_a_at--233--11Chr07:26674809..26674833 (25 bp)
CAAGGGTGCAGGTGTTAATTAGTTT
LOC_Os07g44690
Target Sequence 
GCCTCCTGCAGGCTGATGGAGCTCGACTCCCCCGATCACTCGCCGCCGCCGCCGCCGCCCAAGACTCCAGCAACCGACGG
CGGCGACACGGTGAAGCTGTTCGGCGTGTCGCTGCACGGCAGGAAGAAGCGGGCGCACCGGGACGACGACGACGGCGTCC
ATGACCAGGGAAGCGAGGTGTGAGCGAGCTTTGCAGCCGCCATGCTTGCTCGATCTCGTGTACATATAGAGAAGAGAGGA
TGATGATGAGCTAGCTCGATCGATCAGCTCAGCTCATGCTGCTGCTTGATTTCTTGAGGAGGATGACGACGACGACGACG
ATTGATTTGCGCAAGGGTGCAGGTGTTAATTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50643.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis