Browse Element(s) Details


Os.53916.1.S1_at

Description gb:AK100810.1
DB_XREF= gi:32986019
TID=Os.53916.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121O08, full insert sequence.
FL= gb:AK100810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4470011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein
LOC_Os07g44690Os.50643.2.S1_x_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44690Os.50643.1.S1_a_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44700Os.53916.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44700OsAffx.25220.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53916.1.S1_at--738--1311Chr07:26675783..26675807 (25 bp)
AGATGGCTGATGGTTCGTATTTGAC
LOC_Os07g44700
Os.53916.1.S1_at--680--6871Chr07:26675767..26675791 (25 bp)
GTATTTGACCGTATTTGACCTTCCA
LOC_Os07g44700
Os.53916.1.S1_at--129--6891Chr07:26675757..26675781 (25 bp)
GTATTTGACCTTCCATTGCATATGA
LOC_Os07g44700
Os.53916.1.S1_at--1131--4311Chr07:26675745..26675769 (25 bp)
CCATTGCATATGAAGTACAGCTCGC
LOC_Os07g44700
Os.53916.1.S1_at--668--7031Chr07:26675731..26675755 (25 bp)
GTACAGCTCGCAAACTATCACTAAT
LOC_Os07g44700
Os.53916.1.S1_at--616--6771Chr07:26675633..26675657 (25 bp)
GTTACACTCAAGCTAGGACACTCAA
LOC_Os07g44700
Os.53916.1.S1_at--212--951Chr07:26675619..26675643 (25 bp)
AGGACACTCAAGTCAACCGACAGAA
LOC_Os07g44700
Os.53916.1.S1_at--282--3692Chr01:37100707..37100726 (20 bp)
CTCTTTTTTCTTTGATACACCTGGG
NONE
Os.53916.1.S1_at--226--6471Chr07:26675523..26675547 (25 bp)
GATACACCTGGGAAGAGACTATATA
LOC_Os07g44700
Os.53916.1.S1_at--565--10191Chr07:26675502..26675526 (25 bp)
TATATGCTGGTGTGTGATGTAACTT
LOC_Os07g44700
Os.53916.1.S1_at--494--7051Chr07:26675484..26675508 (25 bp)
GTAACTTCATCGTGGTTTTGATTTA
LOC_Os07g44700
Target Sequence 
AGATGGCTGATGGTTCGTATTTGACCGTATTTGACCTTCCATTGCATATGAAGTACAGCTCGCAAACTATCACTAATGGT
TTTGCATAGATAATAGTATAATACTGTCATATGAATATATATGATTAAAAAGTTTTACTTCTGATCTGAAGTTACACTCA
AGCTAGGACACTCAAGTCAACCGACAGAACAAGGGGAAGCATGCATGTTTCCTTTCTTCAGACAAGAGATGTTCAATTTG
TTCCTCTCTCTTTTTTCTTTGATACACCTGGGAAGAGACTATATATGCTGGTGTGTGATGTAACTTCATCGTGGTTTTGA
TTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis