Browse Element(s) Details


Os.26585.1.A1_at

Description gb:CB674962
DB_XREF= gi:29678687
DB_XREF=OSJNEe10F11.r
CLONE=OSJNEe10F11
TID=Os.26585.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26585 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T51264 (A.thaliana) T51264 calcium-dependent protein kinase-like - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4471011/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein
LOC_Os07g44690Os.50643.2.S1_x_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44690Os.50643.1.S1_a_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44700Os.53916.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44700OsAffx.25220.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26585.1.A1_at--63--971Chr07:26681913..26682011 (25 bp)
AGGAGCTTGCATCGGAACTTGGACT
LOC_Os07g44710
Os.26585.1.A1_at--289--5491Chr07:26681899..26681923 (25 bp)
GAACTTGGACTTGGTCCATCAGTCC
LOC_Os07g44710
Os.26585.1.A1_at--789--391Chr07:26681848..26681872 (25 bp)
ATCAGACACGCCGATGGGAAGCTTA
LOC_Os07g44710
Os.26585.1.A1_at--448--8171Chr07:26681832..26681856 (25 bp)
GGAAGCTTAGTTTCCTTGGATTCAT
LOC_Os07g44710
Os.26585.1.A1_at--346--7931Chr07:26681815..26681839 (25 bp)
GGATTCATTAAACTTTTGCACGGAG
LOC_Os07g44710
Os.26585.1.A1_at--962--10731Chr07:26681800..26681824 (25 bp)
TTGCACGGAGTTTCTTCGCGATCGA
LOC_Os07g44710
Os.26585.1.A1_at--1124--4611Chr07:26681783..26681807 (25 bp)
GCGATCGATCCCGAAAGCCTAAGAT
LOC_Os07g44710
Os.26585.1.A1_at--289--111Chr07:26681752..26681776 (25 bp)
ATTCTTGCATCAACCAATGAGGTCA
LOC_Os07g44710
Os.26585.1.A1_at--928--10631Chr07:26681570..26681594 (25 bp)
TTCGCCACGTCGGATTGATGTTGTA
LOC_Os07g44710
Os.26585.1.A1_at--472--6291Chr07:26681554..26681578 (25 bp)
GATGTTGTACTGAAGCTGTGTAGAC
LOC_Os07g44710
Os.26585.1.A1_at--229--7751Chr07:26681470..26681494 (25 bp)
GGTGTTTGTCAAAGTCTTGCATTGT
LOC_Os07g44710
Target Sequence 
AGGAGCTTGCATCGGAACTTGGACTTGGTCCATCAGTCCCTCTTCATGTTGTACTCCAAGATTGGATCAGACACGCCGAT
GGGAAGCTTAGTTTCCTTGGATTCATTAAACTTTTGCACGGAGTTTCTTCGCGATCGATCCCGAAAGCCTAAGATAAAAT
CATTCTTGCATCAACCAATGAGGTCAAATTGATGGNTAAGCCAAATTNTNTGGATGGTGTTCGTTGTGTTGCNCGGTTTG
AGGTGGTTGGANAGGATGTNTTGAAAATCAGACNAAAAAAAAGAAAGTGNCAGTTTGTGTAANAGGTGAAAATGTTNTTG
CTGCTACTACTTNTACCCCTCCCCTTCGCCACGTCGGATTGATGTTGTACTGAAGCTGTGTAGACGATGTACAGATGATG
AGGATAGGAAAAAGAATATNGAAGGGTTGAAAAGATTTGAGACTGGTGTTTGTCAAAGTCTTGCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26585.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis