Browse Element(s) Details


OsAffx.25220.1.S1_at

Description tigr:9635.m04491
TID=OsAffx.25220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4470011/11expressed protein
LOC_Os05g055901/11sodium/hydrogen exchanger 3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein
LOC_Os07g44690Os.50643.2.S1_x_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44690Os.50643.1.S1_a_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44700Os.53916.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44700OsAffx.25220.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0009651biological_processresponse to salt stress
GO:0048366biological_processleaf development
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0015081molecular_functionsodium ion transporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25220.1.S1_at--262--3771Chr07:26676467..26676588 (25 bp)
CTCTATCAGACAGATGTGACTTTAG
LOC_Os07g44700
OsAffx.25220.1.S1_at--361--5651Chr07:26676459..26676480 (22 bp)
GACAGATGTGACTTTAGCGATTCGT
LOC_Os07g44700
OsAffx.25220.1.S1_at--47--7371Chr07:26676452..26676476 (25 bp)
GTGACTTTAGCGATTCGTGTTCTCA
LOC_Os07g44700
OsAffx.25220.1.S1_at--843--10451Chr07:26676446..26676470 (25 bp)
TTAGCGATTCGTGTTCTCATGGATT
LOC_Os07g44700
OsAffx.25220.1.S1_at--935--6571Chr07:26676441..26676465 (25 bp)
GATTCGTGTTCTCATGGATTTACCA
LOC_Os07g44700
OsAffx.25220.1.S1_at--431--6731Chr07:26676434..26676458 (25 bp)
GTTCTCATGGATTTACCACGGCACA
LOC_Os07g44700
OsAffx.25220.1.S1_at--1124--6511Chr07:26676425..26676449 (25 bp)
GATTTACCACGGCACATGGTTTGTC
LOC_Os07g44700
OsAffx.25220.1.S1_at--797--1931Chr07:26676417..26676441 (25 bp)
ACGGCACATGGTTTGTCTTCTTCTG
LOC_Os07g44700
OsAffx.25220.1.S1_at--172--8251Chr07:26676415..26676439 (25 bp)
GGCACATGGTTTGTCTTCTTCTGTT
LOC_Os07g44700
OsAffx.25220.1.S1_at--779--10576Chr11:25284730..25284750 (21 bp)
TTCTGTTATCAATTACTTCCTCCGT
NONE
OsAffx.25220.1.S1_at--626--6831Chr07:26675994..26676398 (25 bp)
GTTTCACAATATACAAGTTAGCATA
LOC_Os07g44700
Target Sequence 
CTCTATCAGACAGATGTGACTTTAGCGATTCGTGTTCTCATGGATTTACCACGGCACATGGTTTGTCTTCTTCTGTTATC
AATTACTTCCTCCGTTTCACAATATACAAGTTAGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis