Browse Element(s) Details


Os.16887.1.S1_at

Description gb:AK070161.1
DB_XREF= gi:32980185
TID=Os.16887.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045I10, full insert sequence.
FL= gb:AK070161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4466011/11xylulose kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed
LOC_Os07g44660Os.16887.1.S1_at11/117+26638972..26643649xylulose kinase, putative, expressed
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004856molecular_functionxylulokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16887.1.S1_at--818--6011Chr07:26642937..26642961 (25 bp)
GAGAGATTCGGCATGCCTAACCCTC
LOC_Os07g44660
Os.16887.1.S1_at--83--3251Chr07:26642963..26642987 (25 bp)
CAAGCGGATCATCGCAACCGGTGGC
LOC_Os07g44660
Os.16887.1.S1_at--119--3051Chr07:26643017..26643041 (25 bp)
AATCGCGCAGATCTTTGGCTGTCCT
LOC_Os07g44660
Os.16887.1.S1_at--230--8351Chr07:26643033..26643057 (25 bp)
GGCTGTCCTGTCTTTACAGTTCAGA
LOC_Os07g44660
Os.16887.1.S1_at--1004--1211Chr07:26643050..26643188 (25 bp)
AGTTCAGAGACCTGATTCTGCCTCG
LOC_Os07g44660
Os.16887.1.S1_at--419--3831Chr07:26643208..26643232 (25 bp)
CTGCCCATGGCTGGCTGTGCAATGA
LOC_Os07g44660
Os.16887.1.S1_at--859--251Chr07:26643229..26643253 (25 bp)
ATGAGGAAGGGAGCTTCGTCCCCAT
LOC_Os07g44660
Os.16887.1.S1_at--1037--5891Chr07:26643339..26643363 (25 bp)
GAGCTCCTGGAGAAGTACACGGTGC
LOC_Os07g44660
Os.16887.1.S1_at--19--4571Chr07:26643413..26643437 (25 bp)
GCGCGCGTAGGTAGCAGCATTGCAA
LOC_Os07g44660
Os.16887.1.S1_at--1--751Chr07:26643530..26643554 (25 bp)
ATGTTATTATGTTCTTGTGCACGGA
LOC_Os07g44660
Os.16887.1.S1_at--581--2411Chr07:26643583..26643607 (25 bp)
AAACAAGCTCGTCTGTTCTTTCTGT
LOC_Os07g44660
Target Sequence 
GAGAGATTCGGCATGCCTAACCCTCCCAAGCGGATCATCGCAACCGGTGGCGCATCCTCCAACGAGCGCATCCTCCACTC
AATCGCGCAGATCTTTGGCTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCACTGAGAGCTG
CCCATGGCTGGCTGTGCAATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCAGGGTAACCTGGAGAAGACCTCC
TTGGGTGCAAAGCTCGCCGTCTNCAACCGGAGAGGGTGTGGAGGACAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGA
GGAAGAGGATGGAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGCTGCTGTCCT
CGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAACTTATTTATAATATATAGTTAGTAGTGTATCAAGATC
ATGTTATTATGTTCTTGTGCACGGAATAAATAATAAATGTAAATTTGCAAACTAAACAAGCTCGTCTGTTCTTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis