Browse Element(s) Details


Os.37651.1.S1_at

Description gb:AK104739.1
DB_XREF= gi:32989948
TID=Os.37651.1
CNT=44
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.37651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D07, full insert sequence.
FL= gb:AK104739.1 gb:AK104592.1 gb:AK074012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4462011/11Eukaryotic translation initiation factor 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44550Os.10029.1.S1_at11/117+26601942..26603269Peroxidase family protein, expressed
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed
LOC_Os07g44660Os.16887.1.S1_at11/117+26638972..26643649xylulose kinase, putative, expressed
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37651.1.S1_at--372--5191Chr07:26628763..26628787 (25 bp)
GCAATGACCATGTCGCGCTTACACA
LOC_Os07g44620
Os.37651.1.S1_at--610--571Chr07:26628967..26628991 (25 bp)
ATCCTTGTGGGAAGCTACTGTGCGA
LOC_Os07g44620
Os.37651.1.S1_at--48--7271Chr07:26629100..26629124 (25 bp)
GTCCATCCTCATACATCCATTGAAG
LOC_Os07g44620
Os.37651.1.S1_at--475--5351Chr07:26629121..26629145 (25 bp)
GAAGATCTTGATGAGCTGTCCACGC
LOC_Os07g44620
Os.37651.1.S1_at--418--9011Chr07:26629149..26629173 (25 bp)
TGCAAGTCCCTCTTGTTGCTGGAAC
LOC_Os07g44620
Os.37651.1.S1_at--774--5271Chr07:26629216..26629240 (25 bp)
GAATGACTGGACTGCTTTCTGTGGC
LOC_Os07g44620
Os.37651.1.S1_at--652--8651Chr07:26629235..26629259 (25 bp)
TGTGGCTCAGACACTACGGCTACTG
LOC_Os07g44620
Os.37651.1.S1_at--471--3931Chr07:26629251..26629275 (25 bp)
CGGCTACTGAGCTATCGGTCATTGA
LOC_Os07g44620
Os.37651.1.S1_at--66--1691Chr07:26629302..26629326 (25 bp)
AGCCTGCCGCGATTGTTGATGACAT
LOC_Os07g44620
Os.37651.1.S1_at--868--5531Chr07:26629442..26629466 (25 bp)
GAAACATACCGTCCTGGTGGTGAAT
LOC_Os07g44620
Os.37651.1.S1_at--1052--9951Chr07:26629497..26629521 (25 bp)
TACCTTTGTCTCCTTGAAGCCTACA
LOC_Os07g44620
Target Sequence 
GCAATGACCATGTCGCGCTTACACACCCTGACCTCGACAAGGCCACTGAGGAACTTATTGCNAGATGTGCTTGGGGTTGA
GGTGTTCCGGCAGACAATTGCAGGAAACATCCTTGTGGGAAGCTACTGTGCGATTACAAACAGGGGTGGCCTAGTCCATC
CTCATACATCCATTGAAGATCTTGATGAGCTGTCCACGCTCCTGCAAGTCCCTCTTGTTGCTGGAACCGTGAACCGAGGC
AGCGAGGTCATTGCTGCGGGCANNNNCAGTGAATGACTGGACTGCTTTCTGTGGCTCAGACACTACGGCTACTGAGCTAT
CGGTCATTGAGAGCGTCTTCAAGCTGAGAGAAGGGCAGCCTGCCGCGATTGTTGATGACATGAGGAAGTCTTTGATCGAC
AGTTATGTGTAAAAGACCAAAGTTAGTGAATGTGTGGTTGTGGGAGTATTAACTGTGCTAAAATCGACACAAACTGTACT
CGTGTAATCAGTAGCAGAAACATACCGTCCTGGTGGTGAATTTCTGTCTTCTGAATTACAGACTTATCTTTTACCTTTGT
CTCCTTGAAGCCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis