Browse Element(s) Details


OsAffx.5636.1.S1_at

Description tigr:9635.m04475
TID=OsAffx.5636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4456011/11AMP-binding enzyme family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44520Os.46995.1.S1_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44520Os.46995.1.S1_x_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44530NANA7+26584187..26588077retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44540NANA7+26595731..26598691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44550Os.10029.1.S1_at11/117+26601942..26603269Peroxidase family protein, expressed
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009698biological_processphenylpropanoid metabolism
GO:0005777cellular_componentperoxisome
GO:0004321molecular_functionfatty-acyl-CoA synthase activity
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5636.1.S1_at--69--1711Chr07:26604889..26604913 (25 bp)
ACCATGCGAGGCTACCTGAACAACG
LOC_Os07g44560
OsAffx.5636.1.S1_at--933--7751Chr07:26604784..26604808 (25 bp)
GGTGACCTGTGCTACGTGGACTCGC
LOC_Os07g44560
OsAffx.5636.1.S1_at--95--8091Chr07:26604728..26604752 (25 bp)
GGAGCTGATCAAGTGCAACGCCTAC
LOC_Os07g44560
OsAffx.5636.1.S1_at--272--2871Chr07:26604718..26604742 (25 bp)
AAGTGCAACGCCTACCAGGTGGCTC
LOC_Os07g44560
OsAffx.5636.1.S1_at--428--1291Chr07:26604373..26604397 (25 bp)
AGATCCCGATGGCATATGTGGTCAA
LOC_Os07g44560
OsAffx.5636.1.S1_at--183--2751Chr07:26604350..26604374 (25 bp)
AAGAAACAAGGCAGCGGCCATCTTC
LOC_Os07g44560
OsAffx.5636.1.S1_at--1113--1151Chr07:26604315..26604339 (25 bp)
AGTCATTTCCTTTGTACAGAACAAG
LOC_Os07g44560
OsAffx.5636.1.S1_at--378--2871Chr07:26604127..26604151 (25 bp)
AAGTGGTGTTCGTTGACTCCATTCC
LOC_Os07g44560
OsAffx.5636.1.S1_at--1026--71Chr07:26604107..26604131 (25 bp)
ATTCCAAGGTCTCCTTCAGGCAAAA
LOC_Os07g44560
OsAffx.5636.1.S1_at--600--10531Chr07:26604093..26604117 (25 bp)
TTCAGGCAAAATCCTCAGGCGCCAG
LOC_Os07g44560
OsAffx.5636.1.S1_at--886--891Chr07:26604077..26604101 (25 bp)
AGGCGCCAGCTGAAAAACTTGCTAC
LOC_Os07g44560
Target Sequence 
ACCATGCGAGGCTACCTGAACAACGAGGAGGCGACCGCCCTGGCCCTGGTCGCCGCCGCCGGCTCTGTCTCCGTCTCCGG
CGGCGGCGAGCGGTGGCTGCGGACCGGTGACCTGTGCTACGTGGACTCGCGTGGGCTGGTGTACGTGGTAGACAGGGTGA
AGGAGCTGATCAAGTGCAACGCCTACCAGGTGGCTCCGGCCGAGCTGGAGGACGTCTTGGCCACCCACCCTGACATCCAC
GACGCAGCCGTCGCGCCGTATCCCGACAAGGAGGCCGGCGAGATCCCGATGGCATATGTGGTCAAGAAACAAGGCAGCGG
CCATCTTCAGGAAGATGAAGTCATTTCCTTTGTACAGAACAAGGTGGCGCCATACAAGAAGATCAGGAAAGTGGTGTTCG
TTGACTCCATTCCAAGGTCTCCTTCAGGCAAAATCCTCAGGCGCCAGCTGAAAAACTTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis