Browse Element(s) Details


OsAffx.28901.1.S1_x_at

Description tigr:9640.m03031
TID=OsAffx.28901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3132011/11hypothetical protein
LOC_Os07g445701/11Coleoptile phototropism protein 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31260NANA12+18792634..18793224transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31270NANA12+18793648..18793974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280Os.14491.2.S1_x_at4/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280Os.47463.1.S1_x_at3/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280Os.36736.1.S1_x_at1/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280OsAffx.18435.1.S1_x_at1/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31290OsAffx.31959.1.S1_at10/1112+18802839..18804569hypothetical protein
LOC_Os12g31300NANA12+18806088..18808337retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31310NANA12+18811539..18811971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31320OsAffx.28901.1.S1_x_at11/1112+18816273..18817103hypothetical protein
LOC_Os12g31320OsAffx.28901.2.S1_x_at2/1112+18816273..18817103hypothetical protein
LOC_Os12g31320OsAffx.28901.4.S1_x_at1/1112+18816273..18817103hypothetical protein
LOC_Os12g31330OsAffx.7752.1.S1_at11/1112+18818470..18819056hypothetical protein
LOC_Os12g31340OsAffx.31960.1.S1_at11/1112+18822500..18824193F-box domain containing protein, expressed
LOC_Os12g31350Os.8856.1.S1_at11/1112+18827079..18832070SSXT protein containing protein, expressed
LOC_Os12g31360NANA12+18839838..18840204hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28901.1.S1_x_at--347--3212Chr12:18816362..18816386 (25 bp)
CAAGGCGCTCAAGTCCCGCGAGGAG
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--149--4671Chr12:18816427..18816451 (25 bp)
GCGTGGAGGCCATCAGCACATTTAC
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--900--8431Chr12:18816434..18816458 (25 bp)
GGCCATCAGCACATTTACAAGCGGA
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--726--10431Chr12:18816448..18816670 (25 bp)
TTACAAGCGGAAGCGGCGTCCCCAC
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--811--4631Chr12:18816661..18816685 (25 bp)
GCGTCCCCACCGACAAATGTTCGGG
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--301--2831Chr12:18816702..18816726 (25 bp)
AAGTTCCTGTTCGTGCTGCTGTGGA
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--383--5891Chr12:18816864..18816888 (25 bp)
GAGCGTGTGGTCAGGCACTTACTCG
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--992--3651Chr12:18816881..18816905 (25 bp)
CTTACTCGCCGAGGAAGAGCACGGG
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--1141--4751Chr12:18816930..18816954 (25 bp)
GCTGCAATCACCGAGAAGTCGTGGG
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--629--4571Chr12:18816979..18817003 (25 bp)
GCGCGGGCGCGAGTGATGGTGGGAG
LOC_Os12g31320
OsAffx.28901.1.S1_x_at--515--8011Chr12:18817048..18817072 (25 bp)
GGAGGGTCCCCGGTGATATGACTGG
LOC_Os12g31320
Target Sequence 
CAAGGCGCTCAAGTCCCGCGAGGAGCTGCTGCCGCACGCCGAGGAGCTCGGCATTGTCGGTCGTTGCGTGGAGGCCATCA
GCACATTTACAAGCGGAAGCGGCGTCCCCACCGACAAATGTTCGGGGCGCGTCGTCACCGCCAAGTTCCTGTTCGTGCTG
CTGTGGACGGCGCACATCCTGCTCGCGTTGGACGCGGCGCTCGGGCGGAAGGCCGCGACGCAGCTGGAGCACGCCACGCT
GGAGGACGTGCTCATCCCGAGCTACTCCGGCGGCACGGAGACGCTCTACGACGTGGACTGCGTCGAGCGTGTGGTCAGGC
ACTTACTCGCCGAGGAAGAGCACGGGGAAGCCGGGGAGTCGACCTCAGCCGCTGCAATCACCGAGAAGTCGTGGGGGGGG
GGGGGGGGGGGGGCAGCTGGCGCGGGCGCGAGTGATGGTGGGAGCCTGCTGGCGCTGTGGAGTGCCAGCGTGGAGGGGTG
GTGGAGCGGGAGGGTCCCCGGTGATATGACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28901.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis