Browse Element(s) Details


OsAffx.28901.4.S1_x_at

Description tigr:9635.m04477
TID=OsAffx.28901.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4458011/11phototropic-responsive NPH3 family protein, putative
LOC_Os12g313201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44530NANA7+26584187..26588077retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44540NANA7+26595731..26598691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44550Os.10029.1.S1_at11/117+26601942..26603269Peroxidase family protein, expressed
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009638biological_processphototropism
GO:0009785biological_processblue light signaling pathway
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28901.4.S1_x_at--700--6212Chr12:18816645..18816669 (25 bp)
GAGGCGGTGGTCACCAGCGTCCCCA
LOC_Os12g31320
OsAffx.28901.4.S1_x_at--563--9371Chr07:26611323..26611347 (25 bp)
TCGAGCGTGTGGTCAGGCACGTACT
LOC_Os07g44580
OsAffx.28901.4.S1_x_at--873--9631Chr07:26611335..26611359 (25 bp)
TCAGGCACGTACTCGCCGAGGAAGA
LOC_Os07g44580
OsAffx.28901.4.S1_x_at--1142--4751Chr07:26611391..26611415 (25 bp)
GCTGCAATCACCGAGGAGAAGCGGG
LOC_Os07g44580
OsAffx.28901.4.S1_x_at--1052--1071Chr07:26611431..26611455 (25 bp)
AGGGCGCGAGCGATGGTGGCGAGCC
LOC_Os07g44580
OsAffx.28901.4.S1_x_at--527--4571Chr07:26611434..26611458 (25 bp)
GCGCGAGCGATGGTGGCGAGCCTGC
LOC_Os07g44580
OsAffx.28901.4.S1_x_at--326--6311Chr07:26611513..26611537 (25 bp)
GATACGACTGGGAGGCCTACGACGA
LOC_Os07g44580
OsAffx.28901.4.S1_x_at--715--3432Chr12:18817124..18817148 (25 bp)
CAGATGCCGGCGTTCTCATGGTGGT
NONE
OsAffx.28901.4.S1_x_at--958--4472Chr12:18817129..18817153 (25 bp)
GCCGGCGTTCTCATGGTGGTGGGAC
NONE
OsAffx.28901.4.S1_x_at--1106--3491Chr07:26611591..26611615 (25 bp)
CATGGTGGTGGGACAACGCAGCCGT
LOC_Os07g44580
OsAffx.28901.4.S1_x_at--1107--8611Chr07:26611596..26611620 (25 bp)
TGGTGGGACAACGCAGCCGTCGCCT
LOC_Os07g44580
Target Sequence 
GAGGCGGTGGTCACCAGCGTCCCCACCGACAAGTGCTCGGGGCGCGTCGTCACCGCCAAGTTCCTGTTCGCGCAGCTGTG
GACGGCGCACATCCTGCTCGCGTTGGACGCGGCGCTCGGGCAGAAGGCCGCGACGCAGCTGGAGCACGCCACGCTGGAGG
ACGTGCTCATCCCGAGCTACTCCGGCGGCATGAAGACGCTCTACGACGTGGACTGCGTCGAGCGTGTGGTCAGGCACGTA
CTCGCCGAGGAAGAGCACGGCGAGGCAGGGGAGTCGACCTCAGCCGCTGCAATCACCGAGGAGAAGCGGGGGGGGGGGGG
GGGTGAGGGCGCGAGCGATGGTGGCGAGCCTGCTGGCGCTGTGGAGTGCCGGCGTGGAGGGGGTGGTGGAGCGGGAGGGT
CCCCAGTGATACGACTGGGAGGCCTACGACGAGCTCGTTCGCATGGTGGAGCGCGCCGGCCTCCGCCTCCAGATGCCGGC
GTTCTCATGGTGGTGGGACAACGCAGCCGTCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28901.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis