Browse Element(s) Details


Os.10029.1.S1_at

Description gb:AK102122.1
DB_XREF= gi:32987331
TID=Os.10029.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084O03, full insert sequence.
FL= gb:AK102122.1 gb:AK073381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4455011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed
LOC_Os07g44520Os.46995.1.S1_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44520Os.46995.1.S1_x_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44530NANA7+26584187..26588077retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44540NANA7+26595731..26598691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44550Os.10029.1.S1_at11/117+26601942..26603269Peroxidase family protein, expressed
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10029.1.S1_at--453--6231Chr07:26602827..26602851 (25 bp)
GATGGACAGGCAGTACTACCGGAAC
LOC_Os07g44550
Os.10029.1.S1_at--189--2131Chr07:26602859..26602883 (25 bp)
ACAGGAAGGTGCTGTTCGACTCCGA
LOC_Os07g44550
Os.10029.1.S1_at--1059--3451Chr07:26603037..26603061 (25 bp)
CAGGGTTGTCAACGAGTAACTGTTA
LOC_Os07g44550
Os.10029.1.S1_at--714--6151Chr07:26603071..26603095 (25 bp)
GAGGATGCATCTAGCTACGTACGTG
LOC_Os07g44550
Os.10029.1.S1_at--472--1571Chr07:26603083..26603107 (25 bp)
AGCTACGTACGTGCCATTTTGATTT
LOC_Os07g44550
Os.10029.1.S1_at--1037--6991Chr07:26603089..26603113 (25 bp)
GTACGTGCCATTTTGATTTGTTTTC
LOC_Os07g44550
Os.10029.1.S1_at--259--3191Chr07:26603146..26603170 (25 bp)
CAATATTATTTCGTTGCTTGATTCG
LOC_Os07g44550
Os.10029.1.S1_at--733--6671Chr07:26603158..26603182 (25 bp)
GTTGCTTGATTCGAGATGATCTGGG
LOC_Os07g44550
Os.10029.1.S1_at--891--2991Chr07:26603186..26603210 (25 bp)
AATGTTGTATTTGCACCTGACGGAA
LOC_Os07g44550
Os.10029.1.S1_at--976--5731Chr07:26603204..26603228 (25 bp)
GACGGAATTAATTGTACGCTCCATT
LOC_Os07g44550
Os.10029.1.S1_at--833--1831Chr07:26603219..26603243 (25 bp)
ACGCTCCATTAGAGATATGATCGAA
LOC_Os07g44550
Target Sequence 
GATGGACAGGCAGTACTACCGGAACGTGCTCGACAGGAAGGTGCTGTTCGACTCCGACGCCGCGCTGCTGGCGTCGCGGC
CGACGGCGGCGATGGTGGCGCGGAACGCGGCGGCGCGCGGGAGGTGGGAGAGGAGGTTCGCGAGGGCGATGGTGAAGATG
GGCGGGATCGAGGTCAAGACCGCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTC
AGAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAAGCATGAATTGTCACATTTC
AATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAATGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCA
TTAGAGATATGATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis