Browse Element(s) Details


Os.56899.1.S1_at

Description gb:AK110555.1
DB_XREF= gi:32995764
TID=Os.56899.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C06, full insert sequence.
FL= gb:AK110555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4459011/11Peroxidase family protein, expressed
LOC_Os07g063001/11Peroxidase family protein
LOC_Os07g061901/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44540NANA7+26595731..26598691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44550Os.10029.1.S1_at11/117+26601942..26603269Peroxidase family protein, expressed
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed
LOC_Os07g44660Os.16887.1.S1_at11/117+26638972..26643649xylulose kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0008219biological_processcell death
GO:0009269biological_processresponse to desiccation
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009723biological_processresponse to ethylene stimulus
GO:0009725biological_processresponse to hormone stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009789biological_processpositive regulation of abscisic acid mediated signaling
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0010182biological_processsugar mediated signaling
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56899.1.S1_at--1037--3851Chr07:26614596..26614620 (25 bp)
CTGACGCAGCAGTGCAGCGCGAACG
LOC_Os07g44590
Os.56899.1.S1_at--857--8931Chr07:26614666..26614690 (25 bp)
TGACGCCCGACGTGCTCGACAGGCA
LOC_Os07g44590
Os.56899.1.S1_at--985--9091Chr07:26614678..26614702 (25 bp)
TGCTCGACAGGCAGTACTACACCAA
LOC_Os07g44590
Os.56899.1.S1_at--121--8271Chr07:26614687..26614711 (25 bp)
GGCAGTACTACACCAACGTGCTCAA
LOC_Os07g44590
Os.56899.1.S1_at--919--1933Chr07:26614711..26614735 (25 bp)
ACGGCAGCGCGCTGTTCACGTCGGA
LOC_Os07g44590
Os.56899.1.S1_at--605--9011Chr07:26614887..26614911 (25 bp)
TGCAGGGTCGTCAGCTAATTAATAC
LOC_Os07g44590
Os.56899.1.S1_at--994--2651Chr07:26614925..26614949 (25 bp)
AAGCCATATGTTTAATACATGACTG
LOC_Os07g44590
Os.56899.1.S1_at--880--8892Chr07:26614981..26615005 (25 bp)
TGAGCTGAATTTATACATTGGTACA
LOC_Os07g44590
Os.56899.1.S1_at--864--1711Chr07:26615027..26615051 (25 bp)
ACCAGAAGACTGTATTGTTACTCAT
LOC_Os07g44590
Os.56899.1.S1_at--639--2011Chr07:26615046..26615070 (25 bp)
ACTCATATTTGTTGTTACTGCTAAA
LOC_Os07g44590
Os.56899.1.S1_at--626--2111Chr07:26615076..26615100 (25 bp)
ACAGTAATCCGACATATTGTAGTAT
LOC_Os07g44590
Target Sequence 
CTGACGCAGCAGTGCAGCGCGAACGCGAGCAGCGGCGGCGGCGGCGACCCCACGGTGATGCAGGACGCCGTGACGCCCGA
CGTGCTCGACAGGCAGTACTACACCAACGTGCTCAACGGCAGCGCGCTGTTCACGTCGGACGCGGCGCTGCTGACGTCGC
TGGAGACGAAGGTGGCGGTGCTGGCGAACGCGATCATCCCGGGGCTGTGGGAGGGGAAGTTCAGGGCGGCGATGGTGAGG
ATGGCCGCCGTCGAGGTCAAGTCCGGCGCCGGCGGCGAGATCAGGAAGAACTGCAGGGTCGTCAGCTAATTAATACAATT
GCATATATCAAGCCATATGTTTAATACATGACTGAAAAAAAAACCATTCAATTACGAACTTAAATTGAGCTGAATTTATA
CATTGGTACATGGTTTAATTTATTGATTTATACCAGAAGACTGTATTGTTACTCATATTTGTTGTTACTGCTAAAATGTT
ACAGTAATCCGACATATTGTAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis