Browse Element(s) Details


OsAffx.9594.1.S1_at

Description gb:NM_190312.1
DB_XREF= gi:34907707
GEN=P0035F12.14
TID=OsAffx.9594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0035F12.14 (P0035F12.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g446101/11pyrrolidone-carboxylate peptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44540NANA7+26595731..26598691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44550Os.10029.1.S1_at11/117+26601942..26603269Peroxidase family protein, expressed
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed
LOC_Os07g44660Os.16887.1.S1_at11/117+26638972..26643649xylulose kinase, putative, expressed
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004219molecular_functionpyroglutamyl-peptidase I activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9594.1.S1_at--811--8811Chr01:39561767..39561790 (24 bp)
TGTTGTGCCACGTCAGCGAGTAATT
NONE
OsAffx.9594.1.S1_at--343--9211Chr01:39561359..39561383 (25 bp)
TCCAATCTCCATTTCGAGCTGGTGA
NONE
OsAffx.9594.1.S1_at--804--8651NONE
TGTGAACGCGTTGACTCGAACCGAT
NONE
OsAffx.9594.1.S1_at--856--5411Chr01:39559630..39559654 (25 bp)
GAACCGATCTTCTGAATCCCGATTG
NONE
OsAffx.9594.1.S1_at--347--6611Chr01:39559610..39559634 (25 bp)
GATTGGCCGGCAAGTTCAACGCGTG
NONE
OsAffx.9594.1.S1_at--815--7732Chr07:26619296..26619411 (24 bp)
GGTGGTCACTGGTCAGGCTCCAAAG
LOC_Os07g44610
OsAffx.9594.1.S1_at--815--4751Chr01:39559491..39559515 (25 bp)
GCTGACCTGTCGCATTGATGGCCAT
NONE
OsAffx.9594.1.S1_at--332--8331Chr01:39558085..39558105 (21 bp)
GGCTCCGTCTGATTGCCACGTGAAA
NONE
OsAffx.9594.1.S1_at--1023--7031Chr01:39557453..39557477 (25 bp)
GTAAATAGCTTAGGCCACCATATCT
NONE
OsAffx.9594.1.S1_at--301--7391Chr01:39557413..39557437 (25 bp)
GTGATGTCGGTTTGACTTTTCCTAC
NONE
OsAffx.9594.1.S1_at--977--2031Chr01:39557400..39557424 (25 bp)
GACTTTTCCTACCAACGACGGATGG
NONE
Target Sequence 
TGTTGTGCCACGTCAGCGAGTAATTAAGGATCGAGCTGTACACGTCCAATCTCCATTTCGAGCTGGTGAGGAGCTTAATT
TTGTGAACGCGTTGACTCGAACCGATCTTCTGAATCCCGATTGGCCGGCAAGTTCAACGCGTGCATGGGGACCAGTAGTG
CAGCTGAGCTGTAGCAGAGTGGTGGTCACTGGTCAGGCTCCAAAGCACGAGGACCTGCCGCGTGTACAGCCCCCCGTGCT
GACCTGTCGCATTGATGGCCATGCCAGCTGGCGCGGACAGGTGCAGGCCACCGACAGCCGCGTGGCCGGGGACGACAAGC
CGGGCCAGCCGCCGACGCGGAGCGGCGCCGCCCAATTACTCGTGCGCGTGCGTGCATGCACGCCGCCGGCGGCCGGCCGG
CCGGTCGGACCGCCGCCGCCTCAGCTCGTGGCTCCGTCTGATTGCCACGTGAAATTAATAGTAAATAGCTTAGGCCACCA
TATCTGCATGATGGGCATCAGTGATGTCGGTTTGACTTTTCCTACCAACGACGGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis