Browse Element(s) Details


OsAffx.27508.1.S1_at

Description gb:AK109911.1
DB_XREF= gi:32995120
TID=OsAffx.27508.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-H03, full insert sequence.
FL= gb:AK109911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g444993/11peroxidase, putative, expressed
LOC_Os07g444803/11peroxidase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_x_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44470OsAffx.5634.1.S1_at11/117+26558617..26559307hypothetical protein
LOC_Os07g44480OsAffx.27508.1.S1_at3/117+26560020..26561593peroxidase, putative
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed
LOC_Os07g44520Os.46995.1.S1_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44520Os.46995.1.S1_x_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44530NANA7+26584187..26588077retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44540NANA7+26595731..26598691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44550Os.10029.1.S1_at11/117+26601942..26603269Peroxidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.1.S1_at--393--2952Chr07:26577869..26577893 (25 bp)
AAGGCCAACCTGACGCGGGCGTGCA
LOC_Os07g44499
OsAffx.27508.1.S1_at--391--9972Chr07:26577959..26577983 (25 bp)
TACCGGAACGTGCTCAGCCGCGACG
LOC_Os07g44499
OsAffx.27508.1.S1_at--146--8212Chr07:26578109..26578133 (25 bp)
GGAATCAAGACCAGCGCCAATGGCG
LOC_Os07g44499
OsAffx.27508.1.S1_at--145--4472Chr07:26578152..26578176 (25 bp)
GCCTCGTCAACTAGCCGCCATTGAT
NONE
OsAffx.27508.1.S1_at--891--4151Chr07:26559994..26560018 (25 bp)
CGCCATTGATCATCGGCTAATGATC
NONE
OsAffx.27508.1.S1_at--446--8311Chr07:26559980..26560004 (25 bp)
GGCTAATGATCACAGTTCACGTCAC
NONE
OsAffx.27508.1.S1_at--200--1211Chr07:26559967..26559991 (25 bp)
AGTTCACGTCACAGAATAAGCTCGT
NONE
OsAffx.27508.1.S1_at--876--1392Chr07:26578233..26578257 (25 bp)
AGAATAAGCTCGTGATTTTTGTTTG
NONE
OsAffx.27508.1.S1_at--914--10251Chr07:26559934..26559958 (25 bp)
TTTGTCATATATTTTCCACCGATTA
NONE
OsAffx.27508.1.S1_at--408--10151Chr07:26559875..26559899 (25 bp)
TTTGTTGTAATTCTGCATGTATCTA
NONE
OsAffx.27508.1.S1_at--559--4991Chr07:26559861..26559885 (25 bp)
GCATGTATCTAATATTGGAATTTCA
NONE
Target Sequence 
AAGGCCAACCTGACGCGGGCGTGCAACCGCACCGGCGACCCCACGGTGGTGCAGGACCTCAAAACCCCCGACAAGCTGGA
CAACCAGTACTACCGGAACGTGCTCAGCCGCGACGTGCTCTTCACGTCGGACGCGGCGCTCCGGTCGTCGGAGACGGGGT
TCAGCGTGTTCCTNAACGTGGTCATNCCCGGCCGGTGGGAGAGCAAGTTCGCGGCGGCGATGGTGAAGATGGGCGGNATT
GGAATCAAGACCAGCGCCAATGGCGAGATCAGGAAGAACTGCCGCCTCGTCAACTAGCCGCCATTGATCATCGGCTAATG
ATCACAGTTCACGTCACAGAATAAGCTCGTGATTTTTGTTTGTCATATATTTTCCACCGATTAAAGGTTTAATTAGTTAG
TTTAATTTTGCCATTCTTTTGTTGTAATTCTGCATGTATCTAATATTGGAATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis