Browse Element(s) Details


OsAffx.28900.1.S1_x_at

Description tigr:9635.m04465
TID=OsAffx.28900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4446011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_x_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44470OsAffx.5634.1.S1_at11/117+26558617..26559307hypothetical protein
LOC_Os07g44480OsAffx.27508.1.S1_at3/117+26560020..26561593peroxidase, putative
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed
LOC_Os07g44520Os.46995.1.S1_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44520Os.46995.1.S1_x_at2/117+26580928..26583857retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28900.1.S1_x_at--696--3751Chr07:26556168..26556192 (25 bp)
CTCTCCGGCAACAAGGTCTACTTCG
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--359--5831Chr07:26556060..26556084 (25 bp)
GACCGGCTCAAGCAGATGTTCGCCG
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--786--4371Chr07:26556036..26556060 (25 bp)
GCCAAGGGGCTTGACACCGACGACA
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--833--8451Chr07:26555846..26555870 (25 bp)
TGGCGCAGGACGTCGAGACCCCCGA
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--62--9911Chr07:26555805..26555829 (25 bp)
TACTACAGGAACGTGGTGAGCCACC
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--654--2111Chr07:26555801..26555825 (25 bp)
ACAGGAACGTGGTGAGCCACCGCGT
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--632--1911Chr07:26555795..26555819 (25 bp)
ACGTGGTGAGCCACCGCGTGCTGTT
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--851--1791Chr07:26555783..26555807 (25 bp)
ACCGCGTGCTGTTCAAGTCCGACGC
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--232--9351Chr07:26555730..26555754 (25 bp)
TCGCTGGTGAGCTCCTACGCGGAGT
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--76--8611Chr07:26555726..26555750 (25 bp)
TGGTGAGCTCCTACGCGGAGTCGCA
LOC_Os07g44460
OsAffx.28900.1.S1_x_at--392--9251Chr07:26555718..26555742 (25 bp)
TCCTACGCGGAGTCGCAGAGGCAGT
LOC_Os07g44460
Target Sequence 
CTCTCCGGCAACAAGGTCTACTTCGACATGCCGGCGGGGCGCTACGACGGGCGCGTCTCCCTCGCCAGCGAGACGCTCCC
CAACCTTCCGCCGCCGTTCGCCGGCGTCGACCGGCTCAAGCAGATGTTCGCCGCCAAGGGGCTTGACACCGACGACATGG
TCACGCTCTCCGGCGCGCACTCCATCGGCGTCGCCCACTGCTCCTCCTTCTCCGACCGCCTTCCGCCCAACGCCTCCGAC
ATGGACCCCGAGCTCGCCGCGTCGCTGCAGCAGCAGTGCAGCTCCTCCTCCAGCAATGGCGGCGCCAGCGGCGACAACAC
GGTGGCGCAGGACGTCGAGACCCCCGACAAGCTGGACAACAAGTACTACAGGAACGTGGTGAGCCACCGCGTGCTGTTCA
AGTCCGACGCCGCGCTGCTGGCGTCGCCGGAGACGAGGTCGCTGGTGAGCTCCTACGCGGAGTCGCAGAGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28900.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis