Browse Element(s) Details


OsAffx.5633.1.S1_at

Description tigr:9635.m04461
TID=OsAffx.5633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g444209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44390Os.27639.1.S1_x_at8/117+26520241..26524465transposon protein, putative, unclassified
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_x_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44470OsAffx.5634.1.S1_at11/117+26558617..26559307hypothetical protein
LOC_Os07g44480OsAffx.27508.1.S1_at3/117+26560020..26561593peroxidase, putative
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5633.1.S1_at--79--4411Chr07:26545871..26545895 (25 bp)
GCCACAACATACAAGTTGACATACG
LOC_Os07g44420
OsAffx.5633.1.S1_at--348--3491NONE
CATGGCTAGTCCCTTACGCGGAGAA
NONE
OsAffx.5633.1.S1_at--74--8471NONE
TGGCTAGTCCCTTACGCGGAGAAAA
NONE
OsAffx.5633.1.S1_at--1009--2231Chr07:26544952..26544976 (25 bp)
AAAAAATGGCGTCAGCAAAGGAGAA
LOC_Os07g44420
OsAffx.5633.1.S1_at--870--6711Chr07:26544925..26544949 (25 bp)
GTTCTTTGAATGCTACAAGGGACTC
LOC_Os07g44420
OsAffx.5633.1.S1_at--435--9011Chr07:26544919..26544943 (25 bp)
TGAATGCTACAAGGGACTCACTGCT
LOC_Os07g44420
OsAffx.5633.1.S1_at--650--631Chr07:26544916..26544940 (25 bp)
ATGCTACAAGGGACTCACTGCTTGC
LOC_Os07g44420
OsAffx.5633.1.S1_at--261--9851Chr07:26544912..26544936 (25 bp)
TACAAGGGACTCACTGCTTGCCAGT
LOC_Os07g44420
OsAffx.5633.1.S1_at--1026--2871Chr07:26544909..26544933 (25 bp)
AAGGGACTCACTGCTTGCCAGTACC
LOC_Os07g44420
OsAffx.5633.1.S1_at--27--9691Chr07:26544902..26544926 (25 bp)
TCACTGCTTGCCAGTACCCGAAGGA
LOC_Os07g44420
OsAffx.5633.1.S1_at--225--9072Chr10:14515723..14515744 (22 bp)
TGCTTGCCAGTACCCGAAGGACTGT
NONE
Target Sequence 
GCCACAACATACAAGTTGACATACGCCAAGACAAGACGCCAGATATCGACTTCAGAGATAGGCATGGCTAGTCCCTTACG
CGGAGAAAAAAATGGCGTCAGCAAAGGAGAAGAGTTCTTTGAATGCTACAAGGGACTCACTGCTTGCCAGTACCCGAAGG
ACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis