Browse Element(s) Details


OsAffx.5634.1.S1_at

Description tigr:9635.m04466
TID=OsAffx.5634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_x_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44470OsAffx.5634.1.S1_at11/117+26558617..26559307hypothetical protein
LOC_Os07g44480OsAffx.27508.1.S1_at3/117+26560020..26561593peroxidase, putative
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed
LOC_Os07g44520Os.46995.1.S1_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44520Os.46995.1.S1_x_at2/117+26580928..26583857retrotransposon protein, putative, unclassified
LOC_Os07g44530NANA7+26584187..26588077retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5634.1.S1_at--681--6671Chr07:26558665..26558689 (25 bp)
GTTGCGTGCCAAACCGGCGGCTATG
LOC_Os07g44470
OsAffx.5634.1.S1_at--381--8351Chr07:26558680..26559110 (25 bp)
GGCGGCTATGGCTACGATTCGTCAC
LOC_Os07g44470
OsAffx.5634.1.S1_at--282--10111Chr07:26558686..26559116 (25 bp)
TATGGCTACGATTCGTCACTGGTCT
LOC_Os07g44470
OsAffx.5634.1.S1_at--99--3731Chr07:26559101..26559121 (21 bp)
CTACGATTCGTCACTGGTCTACAAG
LOC_Os07g44470
OsAffx.5634.1.S1_at--86--10631Chr07:26559103..26559127 (25 bp)
TTCGTCACTGGTCTACAAGAACGTG
LOC_Os07g44470
OsAffx.5634.1.S1_at--422--6311Chr07:26559127..26559151 (25 bp)
GATGAGCCAGCATGTGCTGTTCAGA
LOC_Os07g44470
OsAffx.5634.1.S1_at--465--1531Chr07:26559135..26559159 (25 bp)
AGCATGTGCTGTTCAGATCGGACGC
LOC_Os07g44470
OsAffx.5634.1.S1_at--689--7472Chr07:26559220..26559244 (25 bp)
GTGGTGGAACGCCAAGTTCGCGGAG
LOC_Os07g44470
OsAffx.5634.1.S1_at--147--10651Chr07:26559236..26559260 (25 bp)
TTCGCGGAGGCGAATTTCTCAATAC
LOC_Os07g44470
OsAffx.5634.1.S1_at--362--8391Chr07:26559244..26559268 (25 bp)
GGCGAATTTCTCAATACCTGTGAAC
LOC_Os07g44470
OsAffx.5634.1.S1_at--92--3731Chr07:26559253..26559277 (25 bp)
CTCAATACCTGTGAACTACAGACAT
LOC_Os07g44470
Target Sequence 
GTTGCGTGCCAAACCGGCGGCTATGGCTACGATTCGTCACTGGTCTACAAGAACGTGATGAGCCAGCATGTGCTGTTCAG
ATCGGACGCGGCGCTGATGACGGCGGCGGACACCATGGGGCTCGTCCTCGCCAGCGCCTACTTCCCCGGGTGGTGGAACG
CCAAGTTCGCGGAGGCGAATTTCTCAATACCTGTGAACTACAGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis