Browse Element(s) Details


Os.15471.1.S1_at

Description gb:AK100429.1
DB_XREF= gi:32985638
TID=Os.15471.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088F04, full insert sequence.
FL= gb:AK100429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4441010/11WD40-like Beta Propeller Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44380OsAffx.5632.1.S1_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44380OsAffx.5632.1.S1_x_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44390Os.27639.1.S1_x_at8/117+26520241..26524465transposon protein, putative, unclassified
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_x_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44470OsAffx.5634.1.S1_at11/117+26558617..26559307hypothetical protein
LOC_Os07g44480OsAffx.27508.1.S1_at3/117+26560020..26561593peroxidase, putative
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15471.1.S1_at--613--4971Chr07:26542916..26542940 (25 bp)
GCATCTACCTGGTCCGGCCAGACGG
LOC_Os07g44410
Os.15471.1.S1_at--887--1231Chr07:26543099..26543123 (25 bp)
AGTTCCAGCCGTACGGCGACCTGTA
LOC_Os07g44410
Os.15471.1.S1_at--43--4591Chr07:26543114..26543138 (25 bp)
GCGACCTGTACGTGTGCCGGCTCGA
LOC_Os07g44410
Os.15471.1.S1_at--965--7911Chr07:26543147..26543171 (25 bp)
GGTTGGTCAGGCTCACCTGCAACGC
LOC_Os07g44410
Os.15471.1.S1_at--1032--2591Chr07:26543167..26543191 (25 bp)
AACGCCTACGAGAACGGCACGCCGG
LOC_Os07g44410
Os.15471.1.S1_at--958--3891Chr07:26543266..26543290 (25 bp)
CTGGGCGAGTTTGATGAGCCGCTCT
LOC_Os07g44410
Os.15471.1.S1_at--948--8311NONE
GGCTCACTTGCGACGTCTGAGTTGA
NONE
Os.15471.1.S1_at--911--511Chr07:26543331..26543355 (25 bp)
ATCGATGAGCTGCACTTTTAATTAG
LOC_Os07g44410
Os.15471.1.S1_at--4--9471Chr07:26543363..26543387 (25 bp)
TCTGTGGTGAATTTGATCGGTTGAT
LOC_Os07g44410
Os.15471.1.S1_at--784--2791Chr07:26543388..26543412 (25 bp)
AATAACGGGACGAGCCTGATTGTGT
LOC_Os07g44410
Os.15471.1.S1_at--263--8671Chr07:26543408..26543432 (25 bp)
TGTGTGGGCTAGTACGAACCTTGTT
LOC_Os07g44410
Target Sequence 
GCATCTACCTGGTCCGGCCAGACGGCTCCGGGCTCCGCCGCGTCCACGTCGCCGGGCCGGCGGGGAGCGCGGCGGCGGAC
AGGGAGCGGATCANCCACGTGTGCTTCAGCCCGGACTCGCGNTGGCTGCTGTTCACGGCCAACTTCGGCGGCGTGATGGC
GGAGCCCATCTCGGCNCCGAACCAGTTCCAGCCGTACGGCGACCTGTACGTGTGCCGGCTCGACGGCTCGGGGTTGGTCA
GGCTCACCTGCAACGCCTACGAGAACGGCACGCCGGCGTGGGGCCCGGCGAGCTCGCCGGCGGCGGGGCTGGAGTCGCTG
TCGCTGGTCCCGGGCGCCNGGGGACGAGTCGCTGGGCGAGTTTGATGAGCCGCTCTGGCTCACTTGCGACGTCTGAGTTG
AGGGCGACAGATGATGATCGATGAGCTGCACTTTTAATTAGAATAAAATCTGTGGTGAATTTGATCGGTTGATAATAACG
GGACGAGCCTGATTGTGTGGGCTAGTACGAACCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis