Browse Element(s) Details


Os.11218.1.S1_at

Description gb:AK073273.1
DB_XREF= gi:32983296
TID=Os.11218.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028A12, full insert sequence.
FL= gb:AK073273.1 gb:AK104089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4444011/11peroxiredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_x_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44470OsAffx.5634.1.S1_at11/117+26558617..26559307hypothetical protein
LOC_Os07g44480OsAffx.27508.1.S1_at3/117+26560020..26561593peroxidase, putative
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0010231biological_processmaintenance of dormancy
GO:0008379molecular_functionthioredoxin peroxidase activity
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11218.1.S1_at--966--3651Chr07:26550947..26550971 (25 bp)
CTTCACCCAGGTGGACTGAGAGACT
LOC_Os07g44440
Os.11218.1.S1_at--327--8651Chr07:26550998..26551022 (25 bp)
TGGGCCGTCGGTTTCGTGTGTAATA
LOC_Os07g44440
Os.11218.1.S1_at--624--7471Chr07:26551013..26551037 (25 bp)
GTGTGTAATAAACCAACGCACGACG
LOC_Os07g44440
Os.11218.1.S1_at--75--2611Chr07:26551027..26551051 (25 bp)
AACGCACGACGTAGATGCTTCCACG
LOC_Os07g44440
Os.11218.1.S1_at--192--10051Chr07:26551038..26551062 (25 bp)
TAGATGCTTCCACGTGTGTGTTTCC
LOC_Os07g44440
Os.11218.1.S1_at--649--1911Chr07:26551049..26551073 (25 bp)
ACGTGTGTGTTTCCCGTGCTGCTTC
LOC_Os07g44440
Os.11218.1.S1_at--598--511Chr07:26551083..26551107 (25 bp)
ATCGATCATTCGGTAAGTACTCTAG
LOC_Os07g44440
Os.11218.1.S1_at--404--791Chr07:26551110..26551134 (25 bp)
ATGTGTAATCTGCTGTTTGGGTGTA
LOC_Os07g44440
Os.11218.1.S1_at--611--4951Chr07:26551140..26551164 (25 bp)
GCATTTGCTGTTCTGTTGCCTGAAA
LOC_Os07g44440
Os.11218.1.S1_at--1047--10411Chr07:26551155..26551179 (25 bp)
TTGCCTGAAAGTGACGAACGGATTA
LOC_Os07g44440
Os.11218.1.S1_at--425--10311Chr07:26551221..26551245 (25 bp)
TTTATCCCTTCCGAAATTACTGTGG
LOC_Os07g44440
Target Sequence 
CTTCACCCAGGTGGACTGAGAGACTGATGGTGAGGGAGGGAGGGAGAGATCTGGGCCGTCGGTTTCGTGTGTAATAAACC
AACGCACGACGTAGATGCTTCCACGTGTGTGTTTCCCGTGCTGCTTCGATTGATCGATCGATCATTCGGTAAGTACTCTA
GTTATGTGTAATCTGCTGTTTGGGTGTAGTGGTGCATTTGCTGTTCTGTTGCCTGAAAGTGACGAACGGATTATGTTTGT
CATTTGTATGTAAAATGTAACCGTATGTTTTTTATTTATCCCTTCCGAAATTACTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis