Browse Element(s) Details


Os.5059.1.S1_at

Description gb:AK060298.1
DB_XREF= gi:32970316
TID=Os.5059.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-F07, full insert sequence.
FL= gb:AK060298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4440011/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44350Os.7186.1.S1_at11/117+26499770..26502532Novel plant SNARE 11, putative, expressed
LOC_Os07g44360OsAffx.28899.1.S1_at11/117+26502757..26509762Serine/threonine-protein kinase Haspin, putative, expressed
LOC_Os07g44370NANA7+26514613..26515358Dirigent-like protein, expressed
LOC_Os07g44380OsAffx.5632.1.S1_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44380OsAffx.5632.1.S1_x_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44390Os.27639.1.S1_x_at8/117+26520241..26524465transposon protein, putative, unclassified
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5059.1.S1_at--866--511Chr07:26526675..26526699 (25 bp)
ATCGTTCCGCCAACAGTGAATTCAG
LOC_Os07g44400
Os.5059.1.S1_at--615--8491Chr07:26526642..26526666 (25 bp)
TGGCTCAATCGGATATGCTTCTCTC
LOC_Os07g44400
Os.5059.1.S1_at--350--5991Chr07:26526611..26526635 (25 bp)
GAGACATGAGCATTCACGCTTGCAA
LOC_Os07g44400
Os.5059.1.S1_at--398--9831Chr07:26526581..26526605 (25 bp)
TAAAAGCTCCAGGACGCGTCGTGGT
LOC_Os07g44400
Os.5059.1.S1_at--579--1831Chr07:26526568..26526592 (25 bp)
ACGCGTCGTGGTAGTCATCAATGAA
LOC_Os07g44400
Os.5059.1.S1_at--1105--5231Chr07:26526527..26526551 (25 bp)
GAATCAGATCAGACACTTCTTGTGT
LOC_Os07g44400
Os.5059.1.S1_at--227--4851Chr07:26526481..26526505 (25 bp)
GCTACAGGCCTACTTTTTTCTGAAG
LOC_Os07g44400
Os.5059.1.S1_at--914--6151Chr07:26526412..26526436 (25 bp)
GAGGTACATCCATCCAGTGTATTTA
LOC_Os07g44400
Os.5059.1.S1_at--89--6531Chr07:26526386..26526410 (25 bp)
GATTTGTGCAGATTTCCGTCGTATG
LOC_Os07g44400
Os.5059.1.S1_at--860--5531Chr07:26526326..26526350 (25 bp)
GAAACTTTTCTCCAACGAGTGAGTC
LOC_Os07g44400
Os.5059.1.S1_at--96--8471Chr07:26526287..26526311 (25 bp)
TGGCCCCTTTCACAGAACCATAAGT
LOC_Os07g44400
Target Sequence 
ATCGTTCCGCCAACAGTGAATTCAGCAGGAGGCTGGCTCAATCGGATATGCTTCTCTCCCACGCGAGACATGAGCATTCA
CGCTTGCAAGCTGCTAAAAGCTCCAGGACGCGTCGTGGTAGTCATCAATGAAGGCTGGAGCGGAACATGAATCAGATCAG
ACACTTCTTGTGTCTGCAGCACCACCTCTCTGACGCTACAGGCCTACTTTTTTCTGAAGATGTAGGGTTAAAAATGGTGA
TGACTGCAAGAAACATTGTATATGAGGTACATCCATCCAGTGTATTTATGATTTGTGCAGATTTCCGTCGTATGTACAGT
ACTACCGTACATGGTAGCAACGGCTTATTGAAACTTTTCTCCAACGAGTGAGTCATTGAGGGGGTGTTTGGCCCCTTTCA
CAGAACCATAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis