Browse Element(s) Details


Os.7186.1.S1_at

Description gb:AK067595.1
DB_XREF= gi:32977613
TID=Os.7186.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108F08, full insert sequence.
FL= gb:AK067595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4435011/11Novel plant SNARE 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44320Os.27473.1.S1_at11/117+26472527..26476633expressed protein
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44350Os.7186.1.S1_at11/117+26499770..26502532Novel plant SNARE 11, putative, expressed
LOC_Os07g44360OsAffx.28899.1.S1_at11/117+26502757..26509762Serine/threonine-protein kinase Haspin, putative, expressed
LOC_Os07g44370NANA7+26514613..26515358Dirigent-like protein, expressed
LOC_Os07g44380OsAffx.5632.1.S1_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44380OsAffx.5632.1.S1_x_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44390Os.27639.1.S1_x_at8/117+26520241..26524465transposon protein, putative, unclassified
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0045045biological_processsecretory pathway
GO:0009504cellular_componentcell plate
GO:0016020cellular_componentmembrane
GO:0005484molecular_functionSNAP receptor activity
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7186.1.S1_at--592--1391Chr07:26501422..26501446 (25 bp)
AGACTCGGTTCACTTTTCACTGAAG
LOC_Os07g44350
Os.7186.1.S1_at--348--6611Chr07:26501470..26501662 (25 bp)
GATTGGTCGCCAGGTTGCAACTGAC
LOC_Os07g44350
Os.7186.1.S1_at--974--9051Chr07:26501666..26501690 (25 bp)
TGCATCATGGCATTCCTATTTCTGA
LOC_Os07g44350
Os.7186.1.S1_at--856--1571Chr07:26502219..26502243 (25 bp)
AGCTCTTGTCCATAGAATCTTTCGG
LOC_Os07g44350
Os.7186.1.S1_at--406--5251Chr07:26502233..26502257 (25 bp)
GAATCTTTCGGAAGCCTCTGAGCAT
LOC_Os07g44350
Os.7186.1.S1_at--1072--1451Chr07:26502288..26502312 (25 bp)
AGAAGATACTATGCACGTCGTGACA
LOC_Os07g44350
Os.7186.1.S1_at--1131--1891Chr07:26502302..26502326 (25 bp)
ACGTCGTGACAATTCTTTTGCGCTT
LOC_Os07g44350
Os.7186.1.S1_at--905--10391Chr07:26502317..26502341 (25 bp)
TTTTGCGCTTGTATATCATCTCATG
LOC_Os07g44350
Os.7186.1.S1_at--22--10171Chr07:26502330..26502354 (25 bp)
TATCATCTCATGTCGTTATTCCCTT
LOC_Os07g44350
Os.7186.1.S1_at--484--1971Chr07:26502357..26502381 (25 bp)
ACTGATCTATTCTTTTCTTGCTGTA
LOC_Os07g44350
Os.7186.1.S1_at--876--9131Chr07:26502421..26502445 (25 bp)
TGCGGCTTCCTGTTGGCTTTATGAA
LOC_Os07g44350
Target Sequence 
AGACTCGGTTCACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAGGTTGCAACTGACAAATGCA
TCATGGCATTCCTATTTCTGATAGTCTGTGGTGTGATTGCAATCATTGTTGTTAAGATTGTCAACCCTCACAACAAGAAC
ATCAGAGACATCCCAGGACTGNGCACCACCTGCGCAGAACAGGNAAGCTCTTGTCCATAGAATCTTTCGGAAGCCTCTGA
GCATTGCGAGTGGGAGGCAACCGAGATGTTTGGGAGAAGATACTATGCACGTCGTGACAATTCTTTTGCGCTTGTATATC
ATCTCATGTCGTTATTCCCTTCCACTGATCTATTCTTTTCTTGCTGTAATTGGTCATTAGTGTTGGATTTACGTTTGATG
GTTGCAGTGCGGCTTCCTGTTGGCTTTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis