Browse Element(s) Details


OsAffx.28899.1.S1_at

Description tigr:9635.m04455
TID=OsAffx.28899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4436011/11Serine/threonine-protein kinase Haspin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44350Os.7186.1.S1_at11/117+26499770..26502532Novel plant SNARE 11, putative, expressed
LOC_Os07g44360OsAffx.28899.1.S1_at11/117+26502757..26509762Serine/threonine-protein kinase Haspin, putative, expressed
LOC_Os07g44370NANA7+26514613..26515358Dirigent-like protein, expressed
LOC_Os07g44380OsAffx.5632.1.S1_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44380OsAffx.5632.1.S1_x_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44390Os.27639.1.S1_x_at8/117+26520241..26524465transposon protein, putative, unclassified
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28899.1.S1_at--235--9631Chr07:26507344..26507368 (25 bp)
TCAGCAGAATCCTTGCAGAGCACAG
LOC_Os07g44360
OsAffx.28899.1.S1_at--919--8051Chr07:26507130..26507154 (25 bp)
GGAGAGCCCTTCACCTAAGAACTTT
LOC_Os07g44360
OsAffx.28899.1.S1_at--491--9791Chr07:26507115..26507139 (25 bp)
TAAGAACTTTGGCACTTGGGCGAGA
LOC_Os07g44360
OsAffx.28899.1.S1_at--849--9111Chr07:26507022..26507046 (25 bp)
TGCGAAATTTGCAGCATCCAGGCCC
LOC_Os07g44360
OsAffx.28899.1.S1_at--658--571Chr07:26507007..26507031 (25 bp)
ATCCAGGCCCTTGTTTGATATCATG
LOC_Os07g44360
OsAffx.28899.1.S1_at--495--6511Chr07:26506991..26507015 (25 bp)
GATATCATGGAGACCCCAGTTGTAC
LOC_Os07g44360
OsAffx.28899.1.S1_at--632--3411Chr07:26506975..26506999 (25 bp)
CAGTTGTACCATCAGTCCGTAGTGA
LOC_Os07g44360
OsAffx.28899.1.S1_at--679--6591Chr07:26506952..26506976 (25 bp)
GATTGCAGTCTTCACGACAGTTGTA
LOC_Os07g44360
OsAffx.28899.1.S1_at--590--2751Chr07:26506884..26506908 (25 bp)
AAGAACAATCCCTTCAGGGCTCAGT
LOC_Os07g44360
OsAffx.28899.1.S1_at--189--2371Chr07:26506855..26506879 (25 bp)
AAACCAGCATTTTTACATCCTTTAG
LOC_Os07g44360
OsAffx.28899.1.S1_at--348--6111Chr07:26506782..26506806 (25 bp)
GAGTGCTGAAGCTATGACTGCCTTT
LOC_Os07g44360
Target Sequence 
TCAGCAGAATCCTTGCAGAGCACAGAAAAGGCCACCAAAGCCGGGTAACCGAGTGAAAAGAACTTTTGGGGGGCCTCCTG
ACTTGAAGAAAGAAAAGGCTTATTTTGAAGAAGTTGATGCTTTTGAACTGATGGAGGAGAGCCCTTCACCTAAGAACTTT
GGCACTTGGGCGAGAGGAATGGAGCAGAATTACATTGTGCATGATCTATCTGCAATACTGGAGAGATGGAAAATCTCCAA
GCTTGCGAAATTTGCAGCATCCAGGCCCTTGTTTGATATCATGGAGACCCCAGTTGTACCATCAGTCCGTAGTGATTGCA
GTCTTCACGACAGTTGTAGAACCCCTGAAAAGGATAGGGGGTCTAGAACAAATCCTATGAGAAGAACAATCCCTTCAGGG
CTCAGTGACAAAACCAGCATTTTTACATCCTTTAGTGAGCTTAAGATTAAGGAAGAACCTGATGATAGCAGCATTCCATC
ATTGAGTGCTGAAGCTATGACTGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis