Browse Element(s) Details


Os.13972.1.S1_at

Description gb:AY336994.1
DB_XREF= gi:33243059
TID=Os.13972.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.13972 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) peroxiredoxin mRNA, complete cds.
PROD=peroxiredoxin
FL= gb:AK101401.1 gb:AY336994.1 gb:D63917.1 gb:AK102982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4443011/11peroxiredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44390Os.27639.1.S1_x_at8/117+26520241..26524465transposon protein, putative, unclassified
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_x_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44470OsAffx.5634.1.S1_at11/117+26558617..26559307hypothetical protein
LOC_Os07g44480OsAffx.27508.1.S1_at3/117+26560020..26561593peroxidase, putative
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0010231biological_processmaintenance of dormancy
GO:0008379molecular_functionthioredoxin peroxidase activity
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13972.1.S1_at--1010--2711Chr07:26547768..26547792 (25 bp)
AAGCAGCTGAACATGGTCGACCCGG
LOC_Os07g44430
Os.13972.1.S1_at--649--5811Chr07:26547786..26547810 (25 bp)
GACCCGGACGAGAAGGATTCCAACG
LOC_Os07g44430
Os.13972.1.S1_at--23--4911Chr07:26548090..26548114 (25 bp)
GCTTCACCAAGGTCGGCTAGATCAT
LOC_Os07g44430
Os.13972.1.S1_at--978--5831Chr07:26548124..26548148 (25 bp)
GACCTCGCTCTTCGTACATCATGTG
LOC_Os07g44430
Os.13972.1.S1_at--763--411Chr07:26548141..26548165 (25 bp)
ATCATGTGCGCCACGCGTGCGTGAT
LOC_Os07g44430
Os.13972.1.S1_at--706--9131Chr07:26548172..26548196 (25 bp)
TGCTGGCGTGATGACTATGCGAGAT
LOC_Os07g44430
Os.13972.1.S1_at--681--611Chr07:26548188..26548212 (25 bp)
ATGCGAGATGCATCCCTGTGTGTGT
LOC_Os07g44430
Os.13972.1.S1_at--385--8171Chr07:26548238..26548262 (25 bp)
GGAACAGTAGTGCATTTACTCTGTG
LOC_Os07g44430
Os.13972.1.S1_at--94--191Chr07:26548251..26548275 (25 bp)
ATTTACTCTGTGCTACTGTCTGAAC
LOC_Os07g44430
Os.13972.1.S1_at--175--2011Chr07:26548255..26548279 (25 bp)
ACTCTGTGCTACTGTCTGAACTTTG
LOC_Os07g44430
Os.13972.1.S1_at--494--10871Chr07:26548285..26548309 (25 bp)
TTGGCAGACTGTTTATGTACCCGTA
LOC_Os07g44430
Target Sequence 
AAGCAGCTGAACATGGTCGACCCGGACGAGAAGGATTCCAACGGNGGCCACCTCCCGTCCCGCGCGCTGCACATCGTCGG
CCCCGACAAGAAGGTGAAGCTGAGCTTCCTGTACCCGGCGTGCGTGGGGCGGAACATGGATGAGGTGGTGCGTGCGGTCG
ACGCGCTGCAGACGGCGGCGAAGCACGCGGTTGGCGACGCCGGTGAACTGGAAGCCCGGCGAGCGCGTTCGTCATCCCTC
CCGGCGTCTCCGACGACGAGGCGAAGGAGAAGTTCCCCCAGGGGTTCGACACCGCCGACCTGCCGTCCGGCAAGGGCTAC
CTCCGCTTCACCAAGGTCGGCTAGATCATATCGATATCGACCTCGCTCTTCGTACATCATGTGCGCCACGCGTGCGTGAT
AGCGTGTGCTGGCGTGATGACTATGCGAGATGCATCCCTGTGTGTGTTGGTGTGGATAATGCCGCTACGTTTGGAACAGT
AGTGCATTTACTCTGTGCTACTGTCTGAACTTTGGCTGTTTGGCAGACTGTTTATGTACCCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis