Browse Element(s) Details


Os.30326.1.S1_at

Description gb:AK108983.1
DB_XREF= gi:32994192
TID=Os.30326.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.30326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-F03, full insert sequence.
FL= gb:AK108983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4445011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os07g44420OsAffx.5633.1.S1_at9/117+26544868..26545934hypothetical protein
LOC_Os07g44430Os.13972.1.S1_at11/117+26547128..26548443peroxiredoxin, putative, expressed
LOC_Os07g44440Os.11218.1.S1_at11/117+26549981..26551287peroxiredoxin, putative, expressed
LOC_Os07g44450Os.30326.1.S1_at11/117+26552843..26553882Dirigent-like protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_x_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44460OsAffx.28900.1.S1_at11/117+26555617..26556639Peroxidase family protein, expressed
LOC_Os07g44470OsAffx.5634.1.S1_at11/117+26558617..26559307hypothetical protein
LOC_Os07g44480OsAffx.27508.1.S1_at3/117+26560020..26561593peroxidase, putative
LOC_Os07g44499OsAffx.27508.1.S1_at3/117+26565560..26578165peroxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30326.1.S1_at--453--8111Chr07:26553500..26553524 (25 bp)
GGACTTGTCATACTTCCGGGTGAAG
LOC_Os07g44450
Os.30326.1.S1_at--13--8851Chr07:26553555..26553579 (25 bp)
TGATCCCATGCATACGTACGCTTGC
LOC_Os07g44450
Os.30326.1.S1_at--119--10331Chr07:26553582..26553606 (25 bp)
TTTCATGGCCGTGGATCGGATCATC
LOC_Os07g44450
Os.30326.1.S1_at--138--9451Chr07:26553597..26553621 (25 bp)
TCGGATCATCGCGTGTCCTAAATAT
LOC_Os07g44450
Os.30326.1.S1_at--969--10131Chr07:26553619..26553643 (25 bp)
TATGCGCTTGTATTTGTGTGATTGT
LOC_Os07g44450
Os.30326.1.S1_at--277--6611Chr07:26553638..26553662 (25 bp)
GATTGTGTGTGTTGAATTTCCTTCT
LOC_Os07g44450
Os.30326.1.S1_at--18--5691Chr07:26553664..26553688 (25 bp)
GACATTCATCATCTTTGCGTGACGA
LOC_Os07g44450
Os.30326.1.S1_at--1104--9411Chr07:26553729..26553753 (25 bp)
TCGTGTTTTGGATTTGCATCTCATG
LOC_Os07g44450
Os.30326.1.S1_at--11--10771Chr07:26553760..26553784 (25 bp)
TTGAGTGACGAGTCAGCGATCGGCT
LOC_Os07g44450
Os.30326.1.S1_at--857--4611Chr07:26553787..26553811 (25 bp)
GCGTGGTGGTTTGTTTTGTCTTTCT
LOC_Os07g44450
Os.30326.1.S1_at--860--10352Chr07:26553811..26553835 (25 bp)
TTTTTCCTGGTTATAATCTTCATAG
LOC_Os07g44450
Target Sequence 
GGACTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTNTACGAATGNTACGTNTGATCCCATGCATACGTACGCTTGC
TNTTTCATGGCCGTGGATCGGATCATCGCGTGTCCTAAATATGCGCTTGTATTTGTGTGATTGTGTGTGTTGAATTTCCT
TCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCNCGGAGAAATGTGCAAAATGTGTTTTTTTTTTCGTGTTTTGG
ATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAGCGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTG
GTTATAATCTTCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis