Browse Element(s) Details


Os.8856.1.S1_at

Description gb:AK105366.1
DB_XREF= gi:32990575
TID=Os.8856.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G03, full insert sequence.
FL= gb:AK105366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3135011/11SSXT protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31290OsAffx.31959.1.S1_at10/1112+18802839..18804569hypothetical protein
LOC_Os12g31300NANA12+18806088..18808337retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31310NANA12+18811539..18811971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31320OsAffx.28901.1.S1_x_at11/1112+18816273..18817103hypothetical protein
LOC_Os12g31320OsAffx.28901.2.S1_x_at2/1112+18816273..18817103hypothetical protein
LOC_Os12g31320OsAffx.28901.4.S1_x_at1/1112+18816273..18817103hypothetical protein
LOC_Os12g31330OsAffx.7752.1.S1_at11/1112+18818470..18819056hypothetical protein
LOC_Os12g31340OsAffx.31960.1.S1_at11/1112+18822500..18824193F-box domain containing protein, expressed
LOC_Os12g31350Os.8856.1.S1_at11/1112+18827079..18832070SSXT protein containing protein, expressed
LOC_Os12g31360NANA12+18839838..18840204hypothetical protein
LOC_Os12g31370Os.19630.1.S1_at11/1112+18847550..18850637DNA repair protein RAD51 homolog B, putative, expressed
LOC_Os12g31380Os.18456.2.S1_x_at11/1112+18850839..18853828Initiation factor 2 subunit family protein, expressed
LOC_Os12g31390OsAffx.7753.1.S1_at11/1112+18855176..18855801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008283biological_processcell proliferation
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0003713molecular_functiontranscription coactivator activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8856.1.S1_at--272--4271Chr12:18827638..18827662 (25 bp)
CCTGGCGTTGTGAATGGCATTCCTC
LOC_Os12g31350
Os.8856.1.S1_at--429--91Chr12:18827620..18827644 (25 bp)
ATTCCTCAGCTTCTGCAAGGCGAAA
LOC_Os12g31350
Os.8856.1.S1_at--664--3011Chr12:18827597..18827621 (25 bp)
AATGCACCGCGGAGCAGATCACCAG
LOC_Os12g31350
Os.8856.1.S1_at--1111--10591Chr12:18827497..18827521 (25 bp)
TTCGGCGATCAATCCTAAGGGCTAA
LOC_Os12g31350
Os.8856.1.S1_at--777--91Chr12:18827402..18827426 (25 bp)
ATTCCTGTGCCCTTGAACGGTGAGT
LOC_Os12g31350
Os.8856.1.S1_at--43--4011Chr12:18827374..18827398 (25 bp)
CGTGATCTTCGCCTGATGATGGTCA
LOC_Os12g31350
Os.8856.1.S1_at--1009--211Chr12:18827283..18827307 (25 bp)
ATTTGTGCTTTGGTTTTGACTCAGA
LOC_Os12g31350
Os.8856.1.S1_at--960--4291Chr12:18827245..18827269 (25 bp)
CCTCTTCTGATCATGGTTCTTGGCC
LOC_Os12g31350
Os.8856.1.S1_at--587--7251Chr12:18827218..18827242 (25 bp)
GTCCGATACTGTTGGCTGCTGGAAT
LOC_Os12g31350
Os.8856.1.S1_at--1047--3811Chr12:18827203..18827227 (25 bp)
CTGCTGGAATTTGTTGCCGGCTGGA
LOC_Os12g31350
Os.8856.1.S1_at--59--3111Chr12:18827176..18827200 (25 bp)
AATAGACGGCGTTAGCACCTGGTGT
LOC_Os12g31350
Target Sequence 
CCTGGCGTTGTGAATGGCATTCCTCAGCTTCTGCAAGGCGAAATGCACCGCGGAGCAGATCACCAGAACGCTGGCGGGGC
CACCTCGGAGCCTTCCGAGAGCCACAGGAGCACCGGCACCGAAAATGACGGTGGAAGCGACTTCGGCGATCAATCCTAAG
GGCTAAGTTGGCCTTTNCAGGTCGCGACGAAAAACAAAAAAAAAANCATGTAGGCAACGACTGAGTGGANAGGGGATCAT
TCCTGTGCCCTTGAACGGTGAGTGGCCGTGATCTTCGCCTGATGATGGTCAGTGGTTGTTACATTTACCTGTGTTTTTGA
GACTTTCAGTCTGGTACAAACGTAGATTGCTGCAAGGATTTGTGCTTTGGTTTTGACTCAGAATTAGGCTTGTANCCTCT
TCTGATCATGGTTCTTGGCCTCGTCCGATACTGTTGGCTGCTGGAATTTGTTGCCGGCTGGAGGAATAGACGGCGTTAGC
ACCTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis