Browse Element(s) Details


OsAffx.7753.1.S1_at

Description tigr:9640.m03038
TID=OsAffx.7753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3139011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31350Os.8856.1.S1_at11/1112+18827079..18832070SSXT protein containing protein, expressed
LOC_Os12g31360NANA12+18839838..18840204hypothetical protein
LOC_Os12g31370Os.19630.1.S1_at11/1112+18847550..18850637DNA repair protein RAD51 homolog B, putative, expressed
LOC_Os12g31380Os.18456.2.S1_x_at11/1112+18850839..18853828Initiation factor 2 subunit family protein, expressed
LOC_Os12g31390OsAffx.7753.1.S1_at11/1112+18855176..18855801hypothetical protein
LOC_Os12g31400OsAffx.31962.1.S1_at11/1112+18863067..18863711hypothetical protein
LOC_Os12g31410OsAffx.31962.1.S1_at2/1112+18864745..18866782expressed protein
LOC_Os12g31420OsAffx.7754.1.S1_x_at9/1112+18869607..18871005hypothetical protein
LOC_Os12g31430OsAffx.19913.1.S1_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31430OsAffx.19913.1.S1_x_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31440Os.7896.1.S1_at11/1112+18880310..18884363expressed protein
LOC_Os12g31440Os.7896.2.S1_at10/1112+18880310..18884363expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7753.1.S1_at--846--4271Chr12:18855263..18855287 (25 bp)
CCTGCACATGTGTCATCCCAAAAAT
LOC_Os12g31390
OsAffx.7753.1.S1_at--239--771Chr12:18855286..18855310 (25 bp)
ATGTCTCTAAAATCACGCATGCCTC
LOC_Os12g31390
OsAffx.7753.1.S1_at--1148--3791Chr12:18855308..18855332 (25 bp)
CTCCCAACTTCGATGCATATGCTAG
LOC_Os12g31390
OsAffx.7753.1.S1_at--934--251Chr12:18855324..18855348 (25 bp)
ATATGCTAGGTCGTGCCGCCGACAT
LOC_Os12g31390
OsAffx.7753.1.S1_at--1150--2811Chr12:18855374..18855398 (25 bp)
AAGTTGTTCCTGCTATTGCTGTCGT
LOC_Os12g31390
OsAffx.7753.1.S1_at--552--71Chr12:18855388..18855412 (25 bp)
ATTGCTGTCGTTGTTCAAGGCTCGA
LOC_Os12g31390
OsAffx.7753.1.S1_at--129--5931Chr12:18855488..18855512 (25 bp)
GAGCTTGCGAGACGAAGCCGCACCA
LOC_Os12g31390
OsAffx.7753.1.S1_at--583--1331Chr12:18855564..18855588 (25 bp)
AGAGGAGGGCTGGACTCTGCATCTC
LOC_Os12g31390
OsAffx.7753.1.S1_at--280--6571Chr12:18855629..18855653 (25 bp)
GATTCTTTGGCTGCGCCGGGAGCAA
LOC_Os12g31390
OsAffx.7753.1.S1_at--405--5131Chr12:18855650..18855674 (25 bp)
GCAACGGTGTCGTTTACATCGCCGA
LOC_Os12g31390
OsAffx.7753.1.S1_at--839--531Chr12:18855667..18855691 (25 bp)
ATCGCCGACGGCTATGATGAGACCA
LOC_Os12g31390
Target Sequence 
CCTGCACATGTGTCATCCCAAAAATGTCTCTAAAATCACGCATGCCTCCCAACTTCGATGCATATGCTAGGTCGTGCCGC
CGACATCGACCCGGAGTACCCTGCGGCCGCCAAGTTGTTCCTGCTATTGCTGTCGTTGTTCAAGGCTCGACCGAGGAGGG
TCGTCAAGACGCCATCAGGCTGGGGGATTCGTTTCCCCAAGCAGTCGTCGCGCCACTCGCCGCCGGAGCTTGCGAGACGA
AGCCGCACCACGCCGCGCCACACTCCCTGCTCGACCTCTCCATCAGGAGATTGAAGGTAGAAGAGGAGGGCTGGACTCTG
CATCTCCATCGGGAGTGTGGCGGCGCGCCGACGCCGAACTCCCGGGGATTCTTTGGCTGCGCCGGGAGCAACGGTGTCGT
TTACATCGCCGACGGCTATGATGAGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis