Browse Element(s) Details


Os.7896.1.S1_at

Description gb:CR280249
DB_XREF= gi:44666815
DB_XREF=CR280249
CLONE=p667b03p3
TID=Os.7896.1
CNT=15
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7896 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_566994.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3144011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31390OsAffx.7753.1.S1_at11/1112+18855176..18855801hypothetical protein
LOC_Os12g31400OsAffx.31962.1.S1_at11/1112+18863067..18863711hypothetical protein
LOC_Os12g31410OsAffx.31962.1.S1_at2/1112+18864745..18866782expressed protein
LOC_Os12g31420OsAffx.7754.1.S1_x_at9/1112+18869607..18871005hypothetical protein
LOC_Os12g31430OsAffx.19913.1.S1_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31430OsAffx.19913.1.S1_x_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31440Os.7896.1.S1_at11/1112+18880310..18884363expressed protein
LOC_Os12g31440Os.7896.2.S1_at10/1112+18880310..18884363expressed protein
LOC_Os12g31450Os.49573.1.S1_at11/1112+18884734..18887126plastid division regulator MinE, putative, expressed
LOC_Os12g31460OsAffx.7755.1.S1_s_at11/1112+18889665..18892094DnaJ domain containing protein, expressed
LOC_Os12g31470NANA12+18894239..18902927retrotransposon protein, putative, unclassified
LOC_Os12g31480Os.24542.1.S1_at10/1112+18904325..18907546expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7896.1.S1_at--796--7831Chr12:18883791..18883811 (21 bp)
GGTACAGTACCTCCAATTGGGTCTA
LOC_Os12g31440
Os.7896.1.S1_at--457--2811Chr12:18883850..18883874 (25 bp)
AAGATTGCTGCTAATGATCCCACCC
LOC_Os12g31440
Os.7896.1.S1_at--190--1591Chr12:18883939..18883963 (25 bp)
AGCTCTTGAAGATGTCACAGCGCTT
LOC_Os12g31440
Os.7896.1.S1_at--468--3311Chr12:18883954..18883978 (25 bp)
CACAGCGCTTTTTTATGACGAGGAC
LOC_Os12g31440
Os.7896.1.S1_at--77--8351Chr12:18884010..18884034 (25 bp)
GGCTGGTGCATGTGTGGTCCAACTA
LOC_Os12g31440
Os.7896.1.S1_at--726--311Chr12:18884056..18884080 (25 bp)
ATACGCCCTTTTCGATTTGACCAGA
LOC_Os12g31440
Os.7896.1.S1_at--764--7931Chr12:18884086..18884110 (25 bp)
GGATTAGCCATTGTGCACCATCATC
LOC_Os12g31440
Os.7896.1.S1_at--172--3911Chr12:18884117..18884141 (25 bp)
CTGGTGATCACCTTAGTTTTTGTAT
LOC_Os12g31440
Os.7896.1.S1_at--1013--5251Chr12:18884160..18884184 (25 bp)
GAATGTTATTCCCTTGTCAGTCAAG
LOC_Os12g31440
Os.7896.1.S1_at--165--7071Chr12:18884217..18884241 (25 bp)
GTAATGCCCTGTCATATACCATGTT
LOC_Os12g31440
Os.7896.1.S1_at--14--10191Chr12:18884231..18884255 (25 bp)
TATACCATGTTCTTGGCAGCTGGCC
LOC_Os12g31440
Target Sequence 
GGTACAGTACCTCCAATTGGGTCTATCAACATGAGTGACATTATGACTGGCAAATGCATCGCCAAGATTGCTGCTAATGA
TCCCACCCTCCGTATTGGCCCTCGCNAAGAATGGTNAACTNNTGAGAGGTCNCTCAATTTNGGAGCACCATTCCNAGAAG
CTCTTGAAGATGTCACAGCGCTTTTTTATGACGAGGACNNGGAATGAGATCTATACTGGCAACAGGCATGGGCTGGTGCA
TGTGTGGTCCAACTAGGTTGTAATATGTATATGTACATACGCCCTTTTCGATTTGACCAGAAGATTGGATTAGCCATTGT
GCACCATCATCCCCTGCCTGGTGATCACCTTAGTTTTTGTATTTTTGGTCTTTTGGCAAAGAATGTTATTCCCTTGTCAG
TCAAGAGAAAAATGTAGTTACCCTGTATATATCTTTTGTAATGCCCTGTCATATACCATGTTCTTGGCAGCTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis