Browse Element(s) Details


OsAffx.31959.1.S1_at

Description tigr:9640.m03028
TID=OsAffx.31959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3129010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31230Os.52574.2.S1_x_at1/1112+18774852..18779179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31230OsAffx.28164.2.S1_at1/1112+18774852..18779179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31240Os.45173.5.S1_x_at4/1112+18781671..18784026retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31240Os.45173.1.S1_x_at1/1112+18781671..18784026retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31250NANA12+18784292..18788713retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31260NANA12+18792634..18793224transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31270NANA12+18793648..18793974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280Os.14491.2.S1_x_at4/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280Os.47463.1.S1_x_at3/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280Os.36736.1.S1_x_at1/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280OsAffx.18435.1.S1_x_at1/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31290OsAffx.31959.1.S1_at10/1112+18802839..18804569hypothetical protein
LOC_Os12g31300NANA12+18806088..18808337retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31310NANA12+18811539..18811971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31320OsAffx.28901.1.S1_x_at11/1112+18816273..18817103hypothetical protein
LOC_Os12g31320OsAffx.28901.2.S1_x_at2/1112+18816273..18817103hypothetical protein
LOC_Os12g31320OsAffx.28901.4.S1_x_at1/1112+18816273..18817103hypothetical protein
LOC_Os12g31330OsAffx.7752.1.S1_at11/1112+18818470..18819056hypothetical protein
LOC_Os12g31340OsAffx.31960.1.S1_at11/1112+18822500..18824193F-box domain containing protein, expressed
LOC_Os12g31350Os.8856.1.S1_at11/1112+18827079..18832070SSXT protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31959.1.S1_at--185--7491Chr12:18804515..18804539 (25 bp)
GTGGTGACGCGGGTATGCGGTGGCG
LOC_Os12g31290
OsAffx.31959.1.S1_at--78--3992Chr12:18804498..18804522 (25 bp)
CGGTGGCGGCAGGGTTTCGGCAGTG
LOC_Os12g31290
OsAffx.31959.1.S1_at--724--6131Chr12:18804449..18804473 (25 bp)
GAGGTGTGGTATGGCGCGGCGGTGC
LOC_Os12g31290
OsAffx.31959.1.S1_at--883--4571NONE
GCGCGGCTGGAAAGCTCCGTTGGAA
NONE
OsAffx.31959.1.S1_at--917--8131Chr12:18803514..18803538 (25 bp)
GGAATAGTGAGGCTCCGACGTTATA
LOC_Os12g31290
OsAffx.31959.1.S1_at--270--10071Chr12:18803510..18803534 (25 bp)
TAGTGAGGCTCCGACGTTATACGCA
LOC_Os12g31290
OsAffx.31959.1.S1_at--577--1111Chr12:18803509..18803533 (25 bp)
AGTGAGGCTCCGACGTTATACGCAA
LOC_Os12g31290
OsAffx.31959.1.S1_at--62--7391Chr12:18803508..18803532 (25 bp)
GTGAGGCTCCGACGTTATACGCAAC
LOC_Os12g31290
OsAffx.31959.1.S1_at--400--6211Chr12:18803506..18803530 (25 bp)
GAGGCTCCGACGTTATACGCAACGA
LOC_Os12g31290
OsAffx.31959.1.S1_at--1057--8311Chr12:18803504..18803528 (25 bp)
GGCTCCGACGTTATACGCAACGAGG
LOC_Os12g31290
OsAffx.31959.1.S1_at--732--9291Chr12:18803501..18803525 (25 bp)
TCCGACGTTATACGCAACGAGGCGT
LOC_Os12g31290
Target Sequence 
GTGGTGACGCGGGTATGCGGTGGCGGCAGGGTTTCGGCAGTGGATTGGGGAAATGGAGCGGAGGCCGAGGTGTGGTATGG
CGCGGCGGTGCCGGCGGCACAAGCGGCGGGCGCGGCGACGGCGCTAGCGGTGGCGGCGCGCGGCTGGAAAGCTCCGTTGG
AAGCTGGTGTGGAGGTCGAGGGAATAGTGAGGCTCCGACGTTATACGCAACGAGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis