Browse Element(s) Details


Os.46863.1.S1_at

Description gb:AK106921.1
DB_XREF= gi:32992130
TID=Os.46863.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAb0078C13.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B05, full insert sequence.
FL= gb:AK106921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2077011/11expressed protein
LOC_Os07g447801/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20740NANA10+10180442..10181477hypothetical protein
LOC_Os10g20750Os.46012.2.S1_x_at9/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.46012.3.S1_x_at5/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.27088.1.A1_x_at4/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20750Os.54691.1.S1_x_at1/1110+10183031..10188623retrotransposon protein, putative, unclassified
LOC_Os10g20759NANA10+10194322..10194775NA
LOC_Os10g20770Os.46863.1.S1_at11/1110+10199273..10201900expressed protein
LOC_Os10g20770Os.50862.1.S1_x_at1/1110+10199273..10201900expressed protein
LOC_Os10g20780OsAffx.14826.2.S1_at1/1110+10210730..10211782Transposable element protein, putative, Retrotrans_gag
LOC_Os10g20794Os.46306.1.S1_x_at6/1110+10216234..10219535transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_x_at11/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_at9/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46863.1.S1_at--92--811Chr10:10199691..10199715 (25 bp)
ATGGGAGCACGCACGTTCGGCAGCT
LOC_Os10g20770
Os.46863.1.S1_at--1096--5911Chr10:10199653..10199677 (25 bp)
GAGCTTATCAGCATGGTCTGGTTCC
LOC_Os10g20770
Os.46863.1.S1_at--965--7611Chr10:10199583..10199607 (25 bp)
GGGACGCCAACGCTAAGCTCGTCGT
LOC_Os10g20770
Os.46863.1.S1_at--537--9411Chr10:10199565..10199589 (25 bp)
TCGTCGTCCTTGACCAGTAGACATG
LOC_Os10g20770
Os.46863.1.S1_at--203--5851Chr10:10199554..10199578 (25 bp)
GACCAGTAGACATGCATGCCTGCTG
LOC_Os10g20770
Os.46863.1.S1_at--362--9191Chr10:10199538..10199562 (25 bp)
TGCCTGCTGCCGCATATATTTTAAT
LOC_Os10g20770
Os.46863.1.S1_at--15--3812Chr10:10199512..10199536 (25 bp)
CTCCCTCTATTTCAATTCGTAGCAA
LOC_Os10g20770
Os.46863.1.S1_at--511--10211Chr10:10199437..10199461 (25 bp)
TATTCAGATTCGTAGTCCCAGATCT
LOC_Os10g20770
Os.46863.1.S1_at--1025--6931Chr10:10199426..10199450 (25 bp)
GTAGTCCCAGATCTAATCACATTAT
LOC_Os10g20770
Os.46863.1.S1_at--374--10491Chr10:10199365..10199389 (25 bp)
TTACAAGTGACCTTCCGCGAGGCAG
LOC_Os10g20770
Os.46863.1.S1_at--367--4151Chr10:10199350..10199374 (25 bp)
CGCGAGGCAGCTTGATTCGTTCTTG
LOC_Os10g20770
Target Sequence 
ATGGGAGCACGCACGTTCGGCAGCTCAGCCGCGGCGGCGAGCTTATCAGCATGGTCTGGTTCCTCATGGCGCACATGGGG
ATCGGCGACATGTACAGGACCCAGGTGGGGGACGCCAACGCTAAGCTCGTCGTCCTTGACCAGTAGACATGCATGCCTGC
TGCCGCATATATTTTAATACTCCCTCTATTTCAATTCGTAGCAACTTAAAATAGGATTAGATCCATTTTAGGACTACAAA
TCTCGACATATATTTATTCAGATTCGTAGTCCCAGATCTAATCACATTATAAGTAGTTATATATTAGGCTAGAGAGAGTA
CATCACTTACAAGTGACCTTCCGCGAGGCAGCTTGATTCGTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis