Browse Element(s) Details


Os.53868.1.S1_s_at

Description gb:AK100505.1
DB_XREF= gi:32985714
TID=Os.53868.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099K15, full insert sequence.
FL= gb:AK100505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4477011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_x_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_s_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.1.S1_at10/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_at9/117+26713800..26715490hypothetical protein
LOC_Os07g44760Os.52115.1.S1_at1/117+26713800..26715490hypothetical protein
LOC_Os07g44770Os.53868.1.S1_s_at11/117+26717278..26719827expressed protein
LOC_Os07g44770Os.53868.1.S1_at10/117+26717278..26719827expressed protein
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44790Os.3933.1.S1_a_at11/117+26729333..26731587Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os07g44800Os.45950.1.A1_at11/117+26732964..26736557SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 1, putative, expressed
LOC_Os07g44810NANA7+26739375..26739920transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53868.1.S1_s_at--831--5131Chr07:26717992..26718016 (25 bp)
GCAAAGGCACTAGCAATAGCAGCAG
LOC_Os07g44770
Os.53868.1.S1_s_at--1011--4451Chr07:26717810..26717834 (25 bp)
GCCTCAGCTGCTAAGAAACTATTTA
LOC_Os07g44770
Os.53868.1.S1_s_at--492--651Chr07:26717638..26717662 (25 bp)
ATGCAGCACATTACTGTCCCTTTTG
LOC_Os07g44770
Os.53868.1.S1_s_at--500--8691Chr07:26717607..26717631 (25 bp)
TGTCCAGGATGTCACCAGTATGCAC
LOC_Os07g44770
Os.53868.1.S1_s_at--721--1191Chr07:26717591..26717615 (25 bp)
AGTATGCACACCCACCCTTAGAAGC
LOC_Os07g44770
Os.53868.1.S1_s_at--404--3351Chr07:26717579..26717603 (25 bp)
CACCCTTAGAAGCAACGCCATTTGT
LOC_Os07g44770
Os.53868.1.S1_s_at--12--1831Chr07:26717565..26717589 (25 bp)
ACGCCATTTGTTTAGAACCTCTGCA
LOC_Os07g44770
Os.53868.1.S1_s_at--506--5431Chr07:26717551..26717575 (25 bp)
GAACCTCTGCATTATGGCCACTAAT
LOC_Os07g44770
Os.53868.1.S1_s_at--392--8452Chr01:34112210..34112229 (20 bp)
GGCCACTAATGTAAATAGCTGCTGT
NONE
Os.53868.1.S1_s_at--92--871Chr07:26717504..26717528 (25 bp)
ATGGCGTTTGCTTCGTAGAATCCTT
LOC_Os07g44770
Os.53868.1.S1_s_at--596--5851Chr07:26717448..26717472 (25 bp)
GACCAAGCACTTATGGTTGGAATCC
LOC_Os07g44770
Target Sequence 
GCAAAGGCACTAGCAATAGCAGCAGAAGATACTCCATCAGCATCCCCATCACCGCCTACCAAAAACATTCCCCCAAAAAG
GCCTGCAGCCTCAGCCTCAGCCTCAGCTGCTAAGAAACTATTTAAAGATGACAGTCAGCAGAAACATAAGAAAAGCGGAT
GAAGAAGGAAACAACATGCAGCACATTACTGTCCCTTTTGGTTATATGTCCAGGATGTCACCAGTATGCACACCCACCCT
TAGAAGCAACGCCATTTGTTTAGAACCTCTGCATTATGGCCACTAATGTAAATAGCTGCTGTCATATATATGGCGTTTGC
TTCGTAGAATCCTTTTGCTTTACATGAAACTGCAATCCAGACTATGACCAAGCACTTATGGTTGGAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53868.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis