Browse Element(s) Details


Os.45950.1.A1_at

Description gb:NM_188825.1
DB_XREF= gi:34904733
GEN=OJ1003_C06.9
TID=Os.45950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) helicase-like transcription factor-like protein (OJ1003_C06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) helicase-like transcription factor-like protein (OJ1003_C06.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4480011/11SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_x_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_s_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.1.S1_at10/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_at9/117+26713800..26715490hypothetical protein
LOC_Os07g44760Os.52115.1.S1_at1/117+26713800..26715490hypothetical protein
LOC_Os07g44770Os.53868.1.S1_s_at11/117+26717278..26719827expressed protein
LOC_Os07g44770Os.53868.1.S1_at10/117+26717278..26719827expressed protein
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44790Os.3933.1.S1_a_at11/117+26729333..26731587Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os07g44800Os.45950.1.A1_at11/117+26732964..26736557SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 1, putative, expressed
LOC_Os07g44810NANA7+26739375..26739920transposon protein, putative, unclassified
LOC_Os07g44820Os.10976.1.A1_at11/117+26752941..26755838expressed protein
LOC_Os07g44820Os.10976.1.A1_x_at11/117+26752941..26755838expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45950.1.A1_at--358--2391Chr07:26735976..26736000 (25 bp)
AAACATCCCGATGAGGATTCCTCAG
LOC_Os07g44800
Os.45950.1.A1_at--1154--7071Chr07:26736000..26736024 (25 bp)
GTCAATCTTGATAGACCTCTTTCTT
LOC_Os07g44800
Os.45950.1.A1_at--683--8331Chr07:26736055..26736079 (25 bp)
GGCGTTCACAGAGCGAAGACCCTTT
LOC_Os07g44800
Os.45950.1.A1_at--47--7191Chr07:26736086..26736110 (25 bp)
GTCTGTTATTTTCTCTCAGTTCAGG
LOC_Os07g44800
Os.45950.1.A1_at--1001--9091Chr07:26736115..26736139 (25 bp)
TGCTGATCTTGCTTGAAGGGCCACT
LOC_Os07g44800
Os.45950.1.A1_at--171--8311Chr07:26736150..26736174 (25 bp)
GGCTTTAACATACTACGACTCGACG
LOC_Os07g44800
Os.45950.1.A1_at--372--5711Chr07:26736166..26736190 (25 bp)
GACTCGACGGCTCTATGACGGCGAA
LOC_Os07g44800
Os.45950.1.A1_at--442--6151Chr07:26736194..26736218 (25 bp)
GAGGTCAGAGGTTATCCGCCAATTC
LOC_Os07g44800
Os.45950.1.A1_at--516--3151Chr07:26736214..26736238 (25 bp)
AATTCGGATGCGTTGGCCCTGATTC
LOC_Os07g44800
Os.45950.1.A1_at--966--8751Chr07:26736307..26736331 (25 bp)
TGTACCTCTTCGACCCTTGGTGGAA
LOC_Os07g44800
Os.45950.1.A1_at--523--151Chr07:26736468..26736492 (25 bp)
ATTAGCGGCGCATTTGGTAGGAAGA
LOC_Os07g44800
Target Sequence 
AAACATCCCGATGAGGATTCCTCAGTCAATCTTGATAGACCTCTTTCTTCCAAGGTGCAAGCCTTGCTGAAACTACTGAG
GCGTTCACAGAGCGAAGACCCTTTGTCAAAGTCTGTTATTTTCTCTCAGTTCAGGAAGATGCTGATCTTGCTTGAAGGGC
CACTTAAAGCAGCAGGCTTTAACATACTACGACTCGACGGCTCTATGACGGCGAAGAAGAGGTCAGAGGTTATCCGCCAA
TTCGGATGCGTTGGCCCTGATTCTCCGACCGTGCTGCTGGCCAGCCTGAAGGCTGCGGGAGCCGGCGTGAACCTGACCGC
GGCATCAACGGTGTACCTCTTCGACCCTTGGTGGAACCCTGGGGTGGAGGAGCAGGCCATGGACAGGGTGCACCGGATCG
GGCAGACCAAGGAGGTGAAAGTGGTGAGGCTGATCGTGAAGGATAGCATCGAGGAGAGGATGCTGGAGCTGCAGGAGAGG
AAGAAGAAGCTGATTAGCGGCGCATTTGGTAGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45950.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis