Browse Element(s) Details


Os.7942.1.S1_at

Description gb:AK068834.1
DB_XREF= gi:32978859
TID=Os.7942.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159M18, full insert sequence.
FL= gb:AK103673.1 gb:AK068834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3857010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38520Os.26766.1.S1_at4/119+22160396..22163323DOMON domain containing protein, expressed
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38540Os.9448.1.A1_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38540Os.9448.1.A2_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed
LOC_Os09g38560Os.3767.1.S1_at7/119+22181283..22182377low temperature and salt responsive protein, putative, expressed
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein
LOC_Os09g38610NANA9+22207524..22208021hypothetical protein
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7942.1.S1_at--699--1391Chr09:22189458..22189482 (25 bp)
AGACGCACTTGCAGATCGCTAAGCT
LOC_Os09g38570
Os.7942.1.S1_at--981--5731Chr09:22189516..22189540 (25 bp)
GACTGGTGGTAGCTCATCTGTAACA
LOC_Os09g38570
Os.7942.1.S1_at--568--7051Chr09:22189535..22189559 (25 bp)
GTAACAGCTGAAGTGGACAACCATG
LOC_Os09g38570
Os.7942.1.S1_at--400--10751Chr09:22190906..22190930 (25 bp)
TTGAAACACCAACCGATCGTCCAGA
LOC_Os09g38570
Os.7942.1.S1_at--523--5011Chr09:22190940..22190964 (25 bp)
GCAGGCTTGTAGTTTTTGGTGTTCT
LOC_Os09g38570
Os.7942.1.S1_at--241--7431Chr09:22190958..22190982 (25 bp)
GTGTTCTTGTGCACCAAATGTATGT
LOC_Os09g38570
Os.7942.1.S1_at--754--8711Chr09:22190980..22191004 (25 bp)
TGTCTTTGATTGATCCGACTTCACC
LOC_Os09g38570
Os.7942.1.S1_at--747--8831Chr09:22191048..22191072 (25 bp)
TGATATGATTGTCCCCATTCAGTGG
LOC_Os09g38570
Os.7942.1.S1_at--661--9751Chr09:22191137..22191161 (25 bp)
TAATATTTTTTGACTGACAGCCATC
LOC_Os09g38570
Os.7942.1.S1_at--10--5651Chr09:22191152..22191176 (25 bp)
GACAGCCATCGTATGTATCATTCTA
LOC_Os09g38570
Os.7942.1.S1_at--131--10171Chr09:22191284..22191308 (25 bp)
TATCTCATTGTTGCGAAGTGTTTTC
NONE
Target Sequence 
AGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTA
ACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCC
AGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAG
AGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAG
AATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTC
TACTTTTTTTAGATAATGGATTTTCATTAATCCNGCCNCTATATCCACGAATGAAATACATAGCCAAATCCACAAATGGT
GTACACAGCCAAATGTATCATTATTCTACTATCTCATTGTTGCGAAGTGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis