Browse Element(s) Details


Os.9448.1.A2_at

Description gb:AK108807.1
DB_XREF= gi:32994016
TID=Os.9448.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D03, full insert sequence.
FL= gb:AK107999.1 gb:AK108807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3854011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38490OsAffx.22026.3.S1_s_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.1.S1_at3/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_x_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490Os.52115.1.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38500Os.14073.1.S1_at11/119+22152200..22155128Mitochondrial glycoprotein, expressed
LOC_Os09g38510Os.50879.1.S1_at10/119+22156447..22159119purine permease, putative, expressed
LOC_Os09g38520Os.26766.1.S1_at4/119+22160396..22163323DOMON domain containing protein, expressed
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38540Os.9448.1.A1_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38540Os.9448.1.A2_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed
LOC_Os09g38560Os.3767.1.S1_at7/119+22181283..22182377low temperature and salt responsive protein, putative, expressed
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9448.1.A2_at--776--5251Chr09:22173383..22173407 (25 bp)
GAATCCCTTTTCTTATATACACCAC
LOC_Os09g38540
Os.9448.1.A2_at--849--3651Chr09:22173407..22173431 (25 bp)
CTTACTATCCTTTTTGTCTATCACC
LOC_Os09g38540
Os.9448.1.A2_at--820--7131Chr09:22173422..22173446 (25 bp)
GTCTATCACCGGTTGGAACTCCATG
LOC_Os09g38540
Os.9448.1.A2_at--1040--10231Chr09:22173470..22173494 (25 bp)
TTTGGATCGCTTGGGCCATCATCAA
LOC_Os09g38540
Os.9448.1.A2_at--401--371Chr09:22173490..22173514 (25 bp)
ATCAAGCTCGCTGTTCACAAAGGTA
LOC_Os09g38540
Os.9448.1.A2_at--1113--7611Chr09:22173534..22173558 (25 bp)
GGGAACTCAGGCTTTTACAATGCGA
LOC_Os09g38540
Os.9448.1.A2_at--221--3691Chr09:22173609..22173633 (25 bp)
CTTTGGTCGCATCTCTTCTGAAGAG
LOC_Os09g38540
Os.9448.1.A2_at--556--5071Chr09:22173658..22173682 (25 bp)
GCAGCTGACTTGCTTGGCTTCTTGA
LOC_Os09g38540
Os.9448.1.A2_at--319--5191Chr09:22173741..22173765 (25 bp)
GCAATGGTCAAGCAACTTCTCGCAG
LOC_Os09g38540
Os.9448.1.A2_at--265--1271Chr09:22173771..22173795 (25 bp)
AGATAGGCTATCCTCCTGTAGTTGT
LOC_Os09g38540
Os.9448.1.A2_at--419--6671Chr09:22173895..22173919 (25 bp)
GTTGCTTACAGTGTTCATTTCTTTG
LOC_Os09g38540
Target Sequence 
GAATCCCTTTTCTTATATACACCACTTACTATCCTTTTTGTCTATCACCGGTTGGAACTCCATGGTTCGGTCTCGGCCTG
CTNACTTGTTTGGATCGCTTGGGCCATCATCAAGCTCGCTGTTCACAAAGGTAAGGGCTCAAATTCTGAAAGGGGAACTC
AGGCTTTTACAATGCGAGATTTCGTGATCTGGAATATGGTTTAGGTGCGACGGTTAAAGGAAGCTCACTTTGGTCGCATC
TCTTCTGAAGAGACAGATTGATTTGTGCTTGAAGTAGCAGCTGACTTGCTTGGCTTCTTGAATTTGACTATGATCACTGT
CATATTATCACAGCCATCACCACCGGATACAGGTGCCAAGCAATGGTCAAGCAACTTCTCGCAGACAGCAGATAGGCTAT
CCTCCTGTAGTTGTTTTCCCAGTAAATTAGGAAACCATAACATAAGCATATTGCAAAACACAACACTATGAACTATATAT
TTTTAGTGCATAATGTAAATTCTGTGAATATCAGTTGCTTACAGTGTTCATTTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9448.1.A2_at     

Putative homologies in rice

Putative homologies in arabidopsis