Browse Element(s) Details


Os.14073.1.S1_at

Description gb:AK099503.1
DB_XREF= gi:32984712
TID=Os.14073.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028N01, full insert sequence.
FL= gb:AK099503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3850011/11Mitochondrial glycoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38440Os.11478.1.S1_at11/119+22129970..22134245SET domain containing protein, expressed
LOC_Os09g38450Os.48054.1.S1_at11/119+22134382..22136559expressed protein
LOC_Os09g38460NANA9+22138056..22139114hypothetical protein
LOC_Os09g38470OsAffx.30629.1.A1_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38470OsAffx.22026.3.S1_s_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38480NANA9+22145223..22147030hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_s_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.1.S1_at3/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_x_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490Os.52115.1.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38500Os.14073.1.S1_at11/119+22152200..22155128Mitochondrial glycoprotein, expressed
LOC_Os09g38510Os.50879.1.S1_at10/119+22156447..22159119purine permease, putative, expressed
LOC_Os09g38520Os.26766.1.S1_at4/119+22160396..22163323DOMON domain containing protein, expressed
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38540Os.9448.1.A1_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38540Os.9448.1.A2_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14073.1.S1_at--480--6311Chr09:22154314..22154338 (25 bp)
GATGACGAGCTTGCCGAGTTCTTGC
LOC_Os09g38500
Os.14073.1.S1_at--579--10591Chr09:22154256..22154280 (25 bp)
TTCTCCGGTGGTTGAAGACTGTCGA
LOC_Os09g38500
Os.14073.1.S1_at--169--993Chr07:26712348..26712372 (25 bp)
AGGAGTTCCTTGCTGGTATCCGCAT
NONE
Os.14073.1.S1_at--390--6911Chr09:22152538..22152562 (25 bp)
GTATCCGCATGACTCTGGACTTATT
LOC_Os09g38500
Os.14073.1.S1_at--860--8831Chr09:22152464..22152488 (25 bp)
TGATAAGAGCTGCTGTCCTACACAC
LOC_Os09g38500
Os.14073.1.S1_at--983--3272Chr09:22152444..22152468 (25 bp)
CACACCATGTAAATTATCCACCTCA
LOC_Os09g38500
Os.14073.1.S1_at--262--3051Chr09:22152412..22152436 (25 bp)
AATCCCATTGTTCGTGCTGTATGAC
LOC_Os09g38500
Os.14073.1.S1_at--784--4951Chr09:22152364..22152388 (25 bp)
GCATATTCTGTGGTTCAATTCTAGT
LOC_Os09g38500
Os.14073.1.S1_at--1090--911Chr09:22152320..22152344 (25 bp)
AGGCACGCTCGTCTGATTATATTGG
LOC_Os09g38500
Os.14073.1.S1_at--633--8071Chr09:22152289..22152313 (25 bp)
GGAGCACTACCATTTGCTGTGGAAT
LOC_Os09g38500
Os.14073.1.S1_at--49--5212Chr07:26712660..26712683 (24 bp)
GCAATTGCTCGCCTATTCATTTTTA
NONE
Target Sequence 
GATGACGAGCTTGCCGAGTTCTTGCACGACTANNTGGCGAACNAGGAAAAGATGGAGCTTCTCCGGTGGTTGAAGACTGT
CGAATCATTCGTCGAGAAGTAGGCACAGGAGAAGCAGATAAATCAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACT
TATTTCAAAGTTCAAACTATGGGAACTGAAAACAAATAGCGTCTGGGAAGTGATGATAAGAGCTGCTGTCCTACACACCA
TGTAAATTATCCACCTCAGTGGTTCAATCCCATTGTTCGTGCTGTATGACTCTAGCAATGAGCTGGGTTTTCAGCATATT
CTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGAGCACTACCA
TTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCATTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis