Browse Element(s) Details


OsAffx.30629.1.A1_at

Description gb:NM_196820.1
DB_XREF= gi:37534999
TID=OsAffx.30629.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0018F16.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g384701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38420Os.11564.1.S1_at11/119+22113719..22119480cysteinyl-tRNA synthetase family protein, expressed
LOC_Os09g38429NANA9+22120102..22120353hypothetical protein
LOC_Os09g38440Os.11478.1.S1_at11/119+22129970..22134245SET domain containing protein, expressed
LOC_Os09g38450Os.48054.1.S1_at11/119+22134382..22136559expressed protein
LOC_Os09g38460NANA9+22138056..22139114hypothetical protein
LOC_Os09g38470OsAffx.30629.1.A1_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38470OsAffx.22026.3.S1_s_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38480NANA9+22145223..22147030hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_s_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.1.S1_at3/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_x_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490Os.52115.1.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38500Os.14073.1.S1_at11/119+22152200..22155128Mitochondrial glycoprotein, expressed
LOC_Os09g38510Os.50879.1.S1_at10/119+22156447..22159119purine permease, putative, expressed
LOC_Os09g38520Os.26766.1.S1_at4/119+22160396..22163323DOMON domain containing protein, expressed
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30629.1.A1_at--778--7171Chr10:16373467..16373491 (25 bp)
GTCGGCATCGCTCCAGGGGAACCCA
NONE
OsAffx.30629.1.A1_at--998--7611Chr10:16373483..16373507 (25 bp)
GGGAACCCATCTTTGTGGCCGAATT
NONE
OsAffx.30629.1.A1_at--263--5451Chr10:16373485..16373509 (25 bp)
GAACCCATCTTTGTGGCCGAATTTC
NONE
OsAffx.30629.1.A1_at--830--1811Chr10:16373487..16373511 (25 bp)
ACCCATCTTTGTGGCCGAATTTCAC
NONE
OsAffx.30629.1.A1_at--736--10251Chr10:16373494..16373518 (25 bp)
TTTGTGGCCGAATTTCACGGCTCCA
NONE
OsAffx.30629.1.A1_at--566--4111Chr10:16373502..16373526 (25 bp)
CGAATTTCACGGCTCCAGTCGGTGC
NONE
OsAffx.30629.1.A1_at--1107--171Chr10:16373505..16373529 (25 bp)
ATTTCACGGCTCCAGTCGGTGCCTT
NONE
OsAffx.30629.1.A1_at--509--7272Chr10:16373547..16373571 (25 bp)
GTGCCGGTCTCCATCGCCGCTAGGG
NONE
OsAffx.30629.1.A1_at--432--7611Chr10:16373571..16373595 (25 bp)
GGGAGGGCTACCACTTCACCATAAC
NONE
OsAffx.30629.1.A1_at--570--6131Chr10:16373573..16373597 (25 bp)
GAGGGCTACCACTTCACCATAACCG
NONE
OsAffx.30629.1.A1_at--371--10831Chr10:16373637..16373661 (25 bp)
TTGTGCCACATCTCTGCCTTTCTCT
NONE
Target Sequence 
GTCGGCATCGCTCCAGGGGAACCCATCTTTGTGGCCGAATTTCACGGCTCCAGTCGGTGCCTTCTCCTGCGACCGCGCCG
GTGCCGGTCTCCATCGCCGCTAGGGGGAGGGCTACCACTTCACCATAACCGCCACCGCTCTGCCTGGCTGCCGTCGGGCT
CTCCTCTCCCTTGTGCCACATCTCTGCCTTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30629.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis