Browse Element(s) Details


Os.3767.1.S1_at

Description gb:AB030211.1
DB_XREF= gi:9453849
GEN=osr8
TID=Os.3767.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3767 (NCBI UniGene Cluster)
DEF=Oryza sativa osr8 mRNA for hydrophobic polypeptide, complete cds.
PROD=hydrophobic polypeptide
FL= gb:AB030211.1 gb:AK062410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g385607/11low temperature and salt responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38510Os.50879.1.S1_at10/119+22156447..22159119purine permease, putative, expressed
LOC_Os09g38520Os.26766.1.S1_at4/119+22160396..22163323DOMON domain containing protein, expressed
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38540Os.9448.1.A1_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38540Os.9448.1.A2_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed
LOC_Os09g38560Os.3767.1.S1_at7/119+22181283..22182377low temperature and salt responsive protein, putative, expressed
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3767.1.S1_at--150--7151Chr09:22181349..22181373 (25 bp)
GTCTTCCTCCGCTTCGGATGCTGCA
LOC_Os09g38560
Os.3767.1.S1_at--982--10611NONE
TTCGGATGCTGCAGCATGGAGTTCT
NONE
Os.3767.1.S1_at--270--4911Chr09:22182272..22182296 (25 bp)
GCTTCTCACCATCCTTGGCTATGTC
LOC_Os09g38560
Os.3767.1.S1_at--329--10871Chr09:22182286..22182310 (25 bp)
TTGGCTATGTCCCTGGCATCATCTA
LOC_Os09g38560
Os.3767.1.S1_at--329--9951Chr09:22182309..22182333 (25 bp)
TACGCAGTCTATGTGCTTGTTGCTC
LOC_Os09g38560
Os.3767.1.S1_at--511--771Chr09:22182319..22182343 (25 bp)
ATGTGCTTGTTGCTCTTGACTCAGA
LOC_Os09g38560
Os.3767.1.S1_at--880--10791Chr09:22182325..22182349 (25 bp)
TTGTTGCTCTTGACTCAGACCAGTA
LOC_Os09g38560
Os.3767.1.S1_at--977--10691Chr09:22182328..22182352 (25 bp)
TTGCTCTTGACTCAGACCAGTACCA
LOC_Os09g38560
Os.3767.1.S1_at--439--9071Chr09:22182371..22182395 (25 bp)
TGCTTAGGCAGTCCACTTCAATTCT
NONE
Os.3767.1.S1_at--398--5491Chr09:22182418..22182442 (25 bp)
GAACAGCCAAGTTCTGCTGTTGAAT
NONE
Os.3767.1.S1_at--633--8251Chr09:22182539..22182563 (25 bp)
GGCACCTAGTCATTTGGTCGTTAAA
NONE
Target Sequence 
GTCTTCCTCCGCTTCGGATGCTGCAGCATGGAGTTCTGCATCTGCTTGCTTCTCACCATCCTTGGCTATGTCCCTGGCAT
CATCTACGCAGTCTATGTGCTTGTTGCTCTTGACTCAGACCAGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCC
ACTTCAATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGCTGTTGAATTGGTATCTGGTAACTTCGTCTG
GGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACC
TAGTCATTTGGTCGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis