Browse Element(s) Details


OsAffx.6519.1.S1_at

Description tigr:9637.m03287
TID=OsAffx.6519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ARIADNE-like protein ARI5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3864011/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein
LOC_Os09g38610NANA9+22207524..22208021hypothetical protein
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6519.1.S1_at--143--8951Chr09:22223064..22223088 (25 bp)
TGACGGAGCTCTGCTTCCTGGCGGA
LOC_Os09g38640
OsAffx.6519.1.S1_at--312--911Chr09:22223040..22223064 (25 bp)
AGGCGTACCAGCAGATCGCCGAGTG
LOC_Os09g38640
OsAffx.6519.1.S1_at--706--4751Chr09:22223009..22223033 (25 bp)
GCTGCTCCGGTGGACGTACGCGTAC
LOC_Os09g38640
OsAffx.6519.1.S1_at--734--9911Chr09:22222987..22223011 (25 bp)
TACGGGTACTACCACCTGGGCACGG
LOC_Os09g38640
OsAffx.6519.1.S1_at--992--3791Chr09:22222852..22222876 (25 bp)
CTCGCCGAGGTGGAACGAACCATCA
LOC_Os09g38640
OsAffx.6519.1.S1_at--590--2811Chr09:22222828..22222852 (25 bp)
AAGTTGAACGCTATCCTCAAGGACA
LOC_Os09g38640
OsAffx.6519.1.S1_at--265--2111Chr09:22222749..22222773 (25 bp)
ACATGGTCGTGGCTTACCGGCAGAA
LOC_Os09g38640
OsAffx.6519.1.S1_at--724--9471Chr09:22222704..22222728 (25 bp)
TCTGCAAGATCTTCTTCCGTAACCT
LOC_Os09g38640
OsAffx.6519.1.S1_at--745--7051Chr09:22222686..22222710 (25 bp)
GTAACCTCGTCAAGACGTTCCAGGA
LOC_Os09g38640
OsAffx.6519.1.S1_at--481--4031Chr09:22222613..22222637 (25 bp)
CGTAGCTACAGGTCCGGCCGAGAGC
LOC_Os09g38640
OsAffx.6519.1.S1_at--426--6011Chr09:22222594..22222618 (25 bp)
GAGAGCTCCGACGATCCTGTTGATC
LOC_Os09g38640
Target Sequence 
TGACGGAGCTCTGCTTCCTGGCGGAGGCGTACCAGCAGATCGCCGAGTGCCGGCGGCTGCTCCGGTGGACGTACGCGTAC
GGGTACTACCACCTGGGCACGGGGCTCGACGGCGACGAGGAGCGGCGCACCATGGTGGAGTGCGCGCAGGGGGAGGCCGA
GCGGCAGCTGGAGAAGCTGCACGACTGCGCCGAGCACGAGAGGGAGGAGCTCCTCGCCGAGGTGGAACGAACCATCAAGT
TGAACGCTATCCTCAAGGACAACGACGGCGAGGAGTCGAAGAAGAAGATGGAGGATAAGGCCGGCGAGATGGTCGACATG
GTCGTGGCTTACCGGCAGAAGCTCTCCGGGCTCACCGGCGTCTGCAAGATCTTCTTCCGTAACCTCGTCAAGACGTTCCA
GGACGGCCTGTTGGAGGTGGGACCTGCTGTTGCCGCCGCCGCCGCAGCCGCCGTAGCTACAGGTCCGGCCGAGAGCTCCG
ACGATCCTGTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis