Browse Element(s) Details


Os.23291.1.A1_at

Description gb:AK111842.1
DB_XREF= gi:37988505
TID=Os.23291.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140K06, full insert sequence.
FL= gb:AK111842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g387004/11strubbelig receptor family 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23291.1.A1_at--7--7351Chr09:22248024..22248048 (25 bp)
GTGCAGCGCACCATCAGCAACAGGG
LOC_Os09g38700
Os.23291.1.A1_at--483--7651Chr09:22248048..22248072 (25 bp)
GGGATGGCCGGATACTTAAGCAACT
LOC_Os09g38700
Os.23291.1.A1_at--713--8411Chr09:22248053..22248077 (25 bp)
GGCCGGATACTTAAGCAACTCACAG
LOC_Os09g38700
Os.23291.1.A1_at--89--9891Chr09:22248060..22248084 (25 bp)
TACTTAAGCAACTCACAGCGGAGCG
LOC_Os09g38700
Os.23291.1.A1_at--1088--3591Chr09:22248123..22248147 (25 bp)
CATTGCCGACTTTGATTGAGGTTTA
NONE
Os.23291.1.A1_at--397--8991Chr09:22248150..22248174 (25 bp)
TGAAGCAAAACTGCCCGTCAAGTCG
NONE
Os.23291.1.A1_at--623--3951Chr09:22248246..22248270 (25 bp)
CGGCAAGAATGCGTTATTGTATTCT
NONE
Os.23291.1.A1_at--715--4631Chr09:22248256..22248280 (25 bp)
GCGTTATTGTATTCTACTTGTAGTG
NONE
Os.23291.1.A1_at--131--451Chr09:22248385..22248409 (25 bp)
ATGTAAAAGGCCTCTCTACCTAGCC
NONE
Os.23291.1.A1_at--893--3711Chr09:22248404..22248428 (25 bp)
CTAGCCACCTAGGTAACAGCAAGTT
NONE
Os.23291.1.A1_at--1085--2131Chr09:22248419..22248443 (25 bp)
ACAGCAAGTTCAGTAACAGGCATTG
NONE
Target Sequence 
GTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGNCATCTNCGATTGGTGATG
GTGATGCNCTTCNCCGAATCATTGCCGACTTTGATTGAGGTTTATNTGAAGCAAAACTGCCCGTCAAGTCGNTCGTGCCA
TTGTACNAAAAAGAAACGGCNTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGNCGGCAAGAATGCGTTAT
TGTATTCTACTTGTAGTGTATANTGTACTGATNTGTTCTTCCCCCTTTGTTTTGTTTTTATCGCTNTAAGGAGCACATGT
AAAAGTCTGATNCTGGANTAGATAGTTAGTAAATGAATNCNNATGTAAAAGGCCTCTCTACCTAGCCACCTAGGTAACAG
CAAGTTCAGTAACAGGCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23291.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis