Browse Element(s) Details


OsAffx.18048.1.S1_at

Description tigr:9637.m03292
TID=OsAffx.18048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3868011/11hypothetical protein
LOC_Os02g157201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18048.1.S1_at--376--8471Chr09:22237877..22237901 (25 bp)
TGGCGCGTGCTTTCAGGCCGGCGGT
LOC_Os09g38680
OsAffx.18048.1.S1_at--221--4171Chr09:22237827..22237851 (25 bp)
CGCCGGTGGAGCTCGGTGCATCAAT
LOC_Os09g38680
OsAffx.18048.1.S1_at--423--7732Chr02:8860843..8860867 (24 bp)
GGTGGAGCTCGGTGCATCAATAGTA
LOC_Os02g15720
OsAffx.18048.1.S1_at--416--351Chr09:22237808..22237832 (25 bp)
ATCAATAGTAGTGCTGTCGCCAACG
LOC_Os09g38680
OsAffx.18048.1.S1_at--440--10051Chr09:22237803..22237827 (25 bp)
TAGTAGTGCTGTCGCCAACGACGAC
LOC_Os09g38680
OsAffx.18048.1.S1_at--888--8551Chr09:22237760..22237784 (25 bp)
TGGAGTGAATCTGCAGGCTGACGCC
LOC_Os09g38680
OsAffx.18048.1.S1_at--977--3051Chr09:22237753..22237777 (25 bp)
AATCTGCAGGCTGACGCCGCGGTGC
LOC_Os09g38680
OsAffx.18048.1.S1_at--676--1391Chr09:22237719..22237743 (25 bp)
AGACGAAGCGGCCAGTGCGCGGCGT
LOC_Os09g38680
OsAffx.18048.1.S1_at--508--9451Chr09:22237692..22237716 (25 bp)
TCGGCGTCGCTGTTGATCAGGAGAC
LOC_Os09g38680
OsAffx.18048.1.S1_at--55--411Chr09:22237681..22237701 (21 bp)
ATCAGGAGACGGATTATGGGTCAAC
LOC_Os09g38680
OsAffx.18048.1.S1_at--686--151Chr09:22237177..22237275 (25 bp)
ATTATGGGTCAACCGATGAGGCTCG
LOC_Os09g38680
Target Sequence 
TGGCGCGTGCTTTCAGGCCGGCGGTGGCCGCCGGCCGCCGCCGCCACCGCCGCCGGTGGAGCTCGGTGCATCAATAGTAG
TGCTGTCGCCAACGACGACGACGACGACAAGTGGTGGTGGAGTGAATCTGCAGGCTGACGCCGCGGTGCCGGAGACGGAG
ACGAAGCGGCCAGTGCGCGGCGTCGTCGGCGTCGCTGTTGATCAGGAGACGGATTATGGGTCAACCGATGAGGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis