Browse Element(s) Details


Os.54799.1.A1_at

Description gb:AK106791.1
DB_XREF= gi:32992000
TID=Os.54799.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A07, full insert sequence.
FL= gb:AK106791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g387305/1126S proteasome subunit P45 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54799.1.A1_at--810--1651Chr09:22261058..22261082 (25 bp)
AGCGCGTGCTGATTGAGCTGCTCAC
LOC_Os09g38730
Os.54799.1.A1_at--495--9091Chr09:22261076..22261100 (25 bp)
TGCTCACCCAGATGGACGGCTTCGA
LOC_Os09g38730
Os.54799.1.A1_at--831--6091Chr09:22261102..22261126 (25 bp)
GAGTCCACCAACGTGCGGGTGATCA
LOC_Os09g38730
Os.54799.1.A1_at--275--2811Chr09:22261189..22261213 (25 bp)
AAGGTCGAGTTCACGGCGCCCGAGA
LOC_Os09g38730
Os.54799.1.A1_at--19--1951Chr09:22261387..22261412 (25 bp)
ACGGCGGACACTTCGACAAGGGATA
LOC_Os09g38730
Os.54799.1.A1_at--5--6071Chr09:22261453..22261477 (25 bp)
GAGTTCCACTTCTACAACTGATCGC
NONE
Os.54799.1.A1_at--855--4911Chr09:22261480..22261504 (25 bp)
GCTTCGCTTAGCAACACAGCTCATA
NONE
Os.54799.1.A1_at--822--2151Chr09:22261495..22261519 (25 bp)
ACAGCTCATATCTTTACGCCTTTCA
NONE
Os.54799.1.A1_at--361--51Chr09:22261532..22261556 (25 bp)
ATTGTATAGCTCCTGCTTGGGCAAC
NONE
Os.54799.1.A1_at--454--7611Chr09:22261550..22261574 (25 bp)
GGGCAACGTCTCAAATGTATACAAT
NONE
Os.54799.1.A1_at--686--5531Chr09:22261607..22261631 (25 bp)
GAAACACCAGCAATTTTACCTTCTT
NONE
Target Sequence 
AGCGCGTGCTGATTGAGCTGCTCACCCAGATGGACGGCTTCGACGAGTCCACCAACGTGCGGGTGATCATGGCGACGAAC
CGCGCCGACGACCTGGACCCGGCGCTGCTCCGGCCGGGGCGGCTGGACCGCAAGGTCGAGTTCACGGCGCCCGAGAGCCC
GGAGGAGAAGCGGCTGGTGCTGCAGACGTGCACGGCGGGGATGAGCCTGGACGGCGACGTCGACCTCGACGCCCTGGCGG
CGCGGCGCGACAAGCTCAGCGCCGCCGAGATCGCCGCCGTGTGCCGCAAGGCCGGCATGCAGGCCGTGCGCGACAGGCGG
GGCGCCGTGACGGCGGACACTTCGACAAGGGATACCTCGCCGTCGTCGGCAAGAAGCCCGGCGACGCCGCCACCGAGTTC
CACTTCTACAACTGATCGCCGGCTTCGCTTAGCAACACAGCTCATATCTTTACGCCTTTCACTAGGAAAAGGCATTGTAT
AGCTCCTGCTTGGGCAACGTCTCAAATGTATACAATTATTCTGTAATTCACTGAACAAATTTAAGATAGAAACACCAGCA
ATTTTACCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54799.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis