Browse Element(s) Details


Os.25141.1.S1_at

Description gb:AK070937.1
DB_XREF= gi:32980960
TID=Os.25141.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023068C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068C02, full insert sequence.
FL= gb:AK070937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3876811/11LEM3 family/CDC50 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38814OsAffx.21820.1.S1_at2/119+22298687..22299046NA
LOC_Os09g38814OsAffx.21820.1.S1_x_at1/119+22298687..22299046NA

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25141.1.S1_at--173--10631Chr09:22276911..22277080 (25 bp)
TTCGTCTTCCCCATGAGAGAGGAGC
LOC_Os09g38768
Os.25141.1.S1_at--62--6191Chr09:22277074..22277098 (25 bp)
GAGGAGCATCTGTCGCTGCACTACA
LOC_Os09g38768
Os.25141.1.S1_at--629--9031Chr09:22277090..22277114 (25 bp)
TGCACTACACTCCTGCTCGACTTGT
LOC_Os09g38768
Os.25141.1.S1_at--870--9351Chr09:22277106..22277130 (25 bp)
TCGACTTGTACGATGATTGAGCAGT
LOC_Os09g38768
Os.25141.1.S1_at--951--712Chr12:26195540..26195560 (21 bp)
ATGATTGAGCAGTTGGGCATGGAAT
NONE
Os.25141.1.S1_at--997--7571Chr09:22277132..22277156 (25 bp)
GGGCATGGAATGTTATGGATCTTTT
LOC_Os09g38768
Os.25141.1.S1_at--48--811Chr09:22277146..22277170 (25 bp)
ATGGATCTTTTTGGACCATGGATTT
LOC_Os09g38768
Os.25141.1.S1_at--747--7611Chr09:22277172..22277196 (25 bp)
GGGAATCATTTCTTAGTTGTTCTGT
LOC_Os09g38768
Os.25141.1.S1_at--797--5651Chr09:22277216..22277240 (25 bp)
GACAGGCTATACTACTACTATGTGT
LOC_Os09g38768
Os.25141.1.S1_at--856--3571Chr09:22277242..22277266 (25 bp)
CATATGTGTTATCTGTAAGGCTGTA
LOC_Os09g38768
Os.25141.1.S1_at--141--2071Chr09:22277272..22277296 (25 bp)
ACTTGCTTGTGATGTACTAGTTCAA
LOC_Os09g38768
Target Sequence 
TTCGTCTTCCCCATGAGAGAGGAGCATCTGTCGCTGCACTACACTCCTGCTCGACTTGTACGATGATTGAGCAGTTGGGC
ATGGAATGTTATGGATCTTTTTGGACCATGGATTTTGGGAATCATTTCTTAGTTGTTCTGTATATATACGATAAATGNTA
GACAGGCTATACTACTACTATGTGTACATATGTGTTATCTGTAAGGCTGTAANTGAACTTGCTTGTGATGTACTAGTTCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis