Browse Element(s) Details


Os.7778.1.S1_at

Description gb:AK112051.1
DB_XREF= gi:37988714
TID=Os.7778.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-E03, full insert sequence.
FL= gb:AK112051.1 gb:AK099388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g387401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7778.1.S1_at--598--5691Chr09:22263769..22263793 (25 bp)
GACTTCCGGCAGAAGGTATGGAGCA
LOC_Os09g38740
Os.7778.1.S1_at--177--6391Chr09:22262074..22262098 (25 bp)
GATCCCATCTCAACTTTGGTGCAAA
NONE
Os.7778.1.S1_at--276--7171Chr09:22262020..22262044 (25 bp)
GTCTGAACTTGCAAGGAGGACTCCT
NONE
Os.7778.1.S1_at--477--8011Chr09:22262006..22262030 (25 bp)
GGAGGACTCCTGTTTTTATCTTGTT
NONE
Os.7778.1.S1_at--17--6811Chr09:22261984..22262008 (25 bp)
GTTTTGTCATAATTTGTTCTCAGCG
NONE
Os.7778.1.S1_at--770--8791Chr09:22261970..22261994 (25 bp)
TGTTCTCAGCGATCAATGCTTGAAG
NONE
Os.7778.1.S1_at--923--4911Chr09:22261953..22261977 (25 bp)
GCTTGAAGAAGTATGCTCCTACGAG
NONE
Os.7778.1.S1_at--395--2071Chr09:22261923..22261947 (25 bp)
ACTTGATGCTTCATGTAACTCTTTC
NONE
Os.7778.1.S1_at--567--8571Chr09:22261871..22261895 (25 bp)
TGCCTGTTGGTAACTCAAAATAAAC
NONE
Os.7778.1.S1_at--370--4951Chr09:22261839..22261863 (25 bp)
GCATAAGCCTCTGATGGATTTACTT
NONE
Os.7778.1.S1_at--246--5591Chr09:22261763..22261787 (25 bp)
GAAATGCTAACGTCTCAATGATGAA
NONE
Target Sequence 
GACTTCCGGCAGAAGGTATGGAGCATGACGGGCGGGCCCTACTGCCGGCCCGTGCACTGGCGCCGCAACACCGCCATCGC
CATGTTCGGCGTCTTCCTCGTCTGCATCCCCATCGCCATGAAGTCCGCCGAGCTCGAGCAACGCCCACATCACCCGGTCC
GGCCGATCCCATCTCAACTTTGGTGCAAAAACTTTGGCAAGAAAGAGTATTGAAGGATGTCTGAACTTGCAAGGAGGACT
CCTGTTTTTATCTTGTTTTGTCATAATTTGTTCTCAGCGATCAATGCTTGAAGAAGTATGCTCCTACGAGTATNCACTTG
ATGCTTCATGTAACTCTTTCNGACTTATATTATGTCATACNAAGGAGTNTGCCTGTTGGTAACTCAAAATAAACTCGTGA
NGCATAAGCCTCTGATGGATTTACTTTAGGGTTNAATGCTCNNTTTGGANGATTCNNTATTTCANTGCATTTTTCTGAAG
AAATGCTAACGTCTCAATGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis