Browse Element(s) Details


Os.37725.1.A1_s_at

Description gb:CB631897
DB_XREF= gi:29626886
DB_XREF=OSIIEb09M02.r
CLONE=OSIIEb09M02
TID=Os.37725.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.37725 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3879011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38814OsAffx.21820.1.S1_at2/119+22298687..22299046NA
LOC_Os09g38814OsAffx.21820.1.S1_x_at1/119+22298687..22299046NA
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37725.1.A1_s_at--839--51Chr09:22287391..22287415 (25 bp)
ATTGATTACGATTCACCACATGCAA
LOC_Os09g38790
Os.37725.1.A1_s_at--1072--2451Chr09:22287354..22287378 (25 bp)
AACAAGAACTAGGTGGCTGAGCTTC
LOC_Os09g38790
Os.37725.1.A1_s_at--847--8911Chr09:22287337..22287361 (25 bp)
TGAGCTTCTGCCAATACCGTAACAT
LOC_Os09g38790
Os.37725.1.A1_s_at--490--2051Chr09:22287304..22287328 (25 bp)
ACTTAATTTTGGTCGAGATTGTGCC
LOC_Os09g38790
Os.37725.1.A1_s_at--897--3411Chr09:22287094..22287118 (25 bp)
CAGAAAGTCGGCTTGCTGGACGCAT
LOC_Os09g38790
Os.37725.1.A1_s_at--267--8111Chr09:22287077..22287101 (25 bp)
GGACGCATGGCCCTGTAAAACAAAT
LOC_Os09g38790
Os.37725.1.A1_s_at--826--5491Chr09:22287051..22287075 (25 bp)
GAACACATGTCTCGTAAATTGCCCC
LOC_Os09g38790
Os.37725.1.A1_s_at--830--6071Chr09:22286984..22287008 (25 bp)
GAGTAGCGCCTACAGTCGGTGATTC
LOC_Os09g38790
Os.37725.1.A1_s_at--986--1531Chr09:22286877..22286901 (25 bp)
AGCTTTGAATGTATCTTTCCACCCG
LOC_Os09g38790
Os.37725.1.A1_s_at--944--9211Chr09:22286860..22286884 (25 bp)
TCCACCCGAGTGAAGATGTTAGTCT
LOC_Os09g38790
Os.37725.1.A1_s_at--1074--6771Chr09:22286843..22286867 (25 bp)
GTTAGTCTAGAACCCATTTTCCCAT
LOC_Os09g38790
Target Sequence 
ATTGATTACGATTCACCACATGCAAATATGGGTTTGTAACAAGAACTAGGTGGCTGAGCTTCTGCCAATACCGTAACATT
TATTGTAACTTAATTTTGGTCGAGATTGTGCCAAGAATTTGGTTCCAGATGAACTCAGTTGATGCAGCNATTGATNGAAG
AATATCAGAAAGTCGGCTTGCTGGACGCATGGCCCTGTAAAACAAATTGAACACATGTCTCGTAAATTGCCCCTATGCAA
TTCACTGACATATTCGCCTATCTGGGCGAGCATAGGAGTAGCGCCTACAGTCGGTGATTCCCCGATTCCTGTTCTCCATT
TGTTTAGCTAGTGACTGGAGGTACTGTGTGCAGTCAANAGGAATATGTTGTTCTGACTTGGAAAGCTTTGAATGTATCTT
TCCACCCGAGTGAAGATGTTAGTCTAGAACCCATTTTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37725.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis