Browse Element(s) Details


Os.8410.1.S1_at

Description gb:AK067997.1
DB_XREF= gi:32978015
TID=Os.8410.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127D16, full insert sequence.
FL= gb:AK067997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3879011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38814OsAffx.21820.1.S1_at2/119+22298687..22299046NA
LOC_Os09g38814OsAffx.21820.1.S1_x_at1/119+22298687..22299046NA
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8410.1.S1_at--356--8471Chr09:22287249..22287273 (25 bp)
TGGCCCGTGAGCCTGGTACTTATGT
LOC_Os09g38790
Os.8410.1.S1_at--161--4251Chr09:22287245..22287269 (25 bp)
CCGTGAGCCTGGTACTTATGTTCAA
LOC_Os09g38790
Os.8410.1.S1_at--1106--7371Chr09:22287243..22287267 (25 bp)
GTGAGCCTGGTACTTATGTTCAAAG
LOC_Os09g38790
Os.8410.1.S1_at--455--4471Chr09:22287239..22287263 (25 bp)
GCCTGGTACTTATGTTCAAAGAGAA
LOC_Os09g38790
Os.8410.1.S1_at--600--6731Chr09:22287191..22287215 (25 bp)
GTTCTTAATCATGCCAATCATATCT
LOC_Os09g38790
Os.8410.1.S1_at--380--3531Chr09:22287182..22287206 (25 bp)
CATGCCAATCATATCTAACACCGTC
LOC_Os09g38790
Os.8410.1.S1_at--1010--9171Chr09:22287180..22287204 (25 bp)
TGCCAATCATATCTAACACCGTCTC
LOC_Os09g38790
Os.8410.1.S1_at--541--3071Chr09:22287176..22287200 (25 bp)
AATCATATCTAACACCGTCTCTCTT
LOC_Os09g38790
Os.8410.1.S1_at--968--9591Chr09:22287174..22287198 (25 bp)
TCATATCTAACACCGTCTCTCTTCT
LOC_Os09g38790
Os.8410.1.S1_at--558--3771Chr09:22287158..22287182 (25 bp)
CTCTCTTCTCCCACAATGTGTGAAC
LOC_Os09g38790
Os.8410.1.S1_at--846--10571Chr09:22287153..22287177 (25 bp)
TTCTCCCACAATGTGTGAACAGATG
LOC_Os09g38790
Target Sequence 
TGGCCCGTGAGCCTGGTACTTATGTTCAAAGAGAAGAGATTAACTGCTTTTTTTTTTTTGTTCTTAATCATGCCAATCAT
ATCTAACACCGTCTCTCTTCTCCCACAATGTGTGAACAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis