Browse Element(s) Details


Os.50240.1.S1_at

Description gb:AK120293.1
DB_XREF= gi:37989916
TID=Os.50240.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050K22, full insert sequence.
FL= gb:AK120293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g025909/11receptor-like kinase, putative, expressed
LOC_Os09g388301/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02540NANA1+831741..835913retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g02550OsAffx.8988.1.S1_at11/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02550Os.34013.2.S1_x_at1/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02560Os.15043.1.S1_at7/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560Os.1977.3.S1_x_at3/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560OsAffx.23090.2.S1_x_at2/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02570Os.45531.1.S1_at6/111+849051..851370receptor-like kinase, putative, expressed
LOC_Os01g02580OsAffx.10882.2.S1_x_at11/111+854759..857385receptor kinase ORK10, putative
LOC_Os01g02590Os.50240.1.S1_at9/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590OsAffx.26617.2.S1_x_at4/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590Os.33796.1.S1_x_at3/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02600Os.1977.3.S1_x_at11/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02600OsAffx.23090.2.S1_x_at1/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02610OsAffx.26617.5.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610OsAffx.26617.2.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.33796.1.S1_x_at4/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.45516.2.S1_x_at1/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02629NANA1+880963..884589retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50240.1.S1_at--517--4411Chr01:859783..859807 (25 bp)
GCCAGTAGCTAGGTGTTAACAGTGA
LOC_Os01g02590
Os.50240.1.S1_at--95--31Chr01:859705..859729 (25 bp)
ATTGGATCTTGCCAGAAACGGACTG
LOC_Os01g02590
Os.50240.1.S1_at--1062--472Chr02:15255574..15255613 (24 bp)
ATCGGCTGGAAACAGAGTCGGAATA
NONE
Os.50240.1.S1_at--319--5231Chr01:859657..859681 (25 bp)
GAATATGATTAAGCCGATATGGCAA
LOC_Os01g02590
Os.50240.1.S1_at--578--2672Chr09:4283040..4283059 (20 bp)
AAGCAGCCGATACAACTTGACTTGG
NONE
Os.50240.1.S1_at--45--351NONE
ATACAACTTGACTTGGGCTGGACAT
NONE
Os.50240.1.S1_at--1131--10731NONE
TTGACTTGGGCTGGACATGGGCCTA
NONE
Os.50240.1.S1_at--188--5675Chr09:22305770..22305792 (23 bp)
GACATGGGCCTAGATTGGAATAACT
LOC_Os09g38830
Os.50240.1.S1_at--83--1351Chr01:859567..859591 (25 bp)
AGAGATTGAGCTCATTTAAGGAAAT
LOC_Os01g02590
Os.50240.1.S1_at--360--6054Chr03:22035480..22035504 (25 bp)
GAGATATGGTAAGAGTCCGCCATGT
NONE
Os.50240.1.S1_at--382--6851Chr01:859449..859473 (25 bp)
GTTTGAGTCATGTTCATAATGGAGA
LOC_Os01g02590
Target Sequence 
GCCAGTAGCTAGGTGTTAACAGTGAAATTTGGCAAGATAGACTCAGATTTGGAGTTGGATATCGAGGCAAAATTGAAGAT
TGGATCTTGCCAGAAACGGACTGCGCATCGGCTGGAAACAGAGTCGGAATATGATTAAGCCGATATGGCAAGCAGCCGAT
ACAACTTGACTTGGGCTGGACATGGGCCTAGATTGGAATAACTGACATTGCCGTTTAGAGATTGAGCTCATTTAAGGAAA
TTGTATCTATTAATTAGAATATTTAATGTCAGTTTGAATTAGAGATATGGTAAGAGTCCGCCATGTGGACTTGTTTGTTT
TTATCTTTATGAAAGTTTGAGTCATGTTCATAATGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis