Browse Element(s) Details


OsAffx.8988.1.S1_at

Description tigr:9629.m00167
TID=OsAffx.8988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0255011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02510NANA1+814344..814970retrotransposon protein, putative, unclassified, expressed
LOC_Os01g02520NANA1+818146..820809retrotransposon protein, putative, unclassified
LOC_Os01g02530NANA1+821426..827580retrotransposon protein, putative, unclassified, expressed
LOC_Os01g02540NANA1+831741..835913retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g02550OsAffx.8988.1.S1_at11/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02550Os.34013.2.S1_x_at1/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02560Os.15043.1.S1_at7/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560Os.1977.3.S1_x_at3/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560OsAffx.23090.2.S1_x_at2/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02570Os.45531.1.S1_at6/111+849051..851370receptor-like kinase, putative, expressed
LOC_Os01g02580OsAffx.10882.2.S1_x_at11/111+854759..857385receptor kinase ORK10, putative
LOC_Os01g02590Os.50240.1.S1_at9/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590OsAffx.26617.2.S1_x_at4/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590Os.33796.1.S1_x_at3/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02600Os.1977.3.S1_x_at11/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02600OsAffx.23090.2.S1_x_at1/111+862768..865865Ser/Thr receptor-like kinase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8988.1.S1_at--19--1791Chr01:837185..837209 (25 bp)
ACCGAGGGTGTGAGATGCAAATTCT
LOC_Os01g02550
OsAffx.8988.1.S1_at--788--5611Chr01:837126..837150 (25 bp)
GACAGCAAGTTCATTCCAAAAGTTG
LOC_Os01g02550
OsAffx.8988.1.S1_at--393--10411Chr01:837061..837085 (25 bp)
TTTTGTGCCTGTTAGTGCTGCACGA
LOC_Os01g02550
OsAffx.8988.1.S1_at--800--3871Chr01:837053..837077 (25 bp)
CTGTTAGTGCTGCACGAGGAACAAT
LOC_Os01g02550
OsAffx.8988.1.S1_at--1038--7711Chr01:836838..836862 (25 bp)
GGTGAGGTGGTTACTAGTGCCTTTA
LOC_Os01g02550
OsAffx.8988.1.S1_at--983--7491Chr01:836832..836856 (25 bp)
GTGGTTACTAGTGCCTTTAATATGC
LOC_Os01g02550
OsAffx.8988.1.S1_at--583--8991Chr01:836759..836783 (25 bp)
TGAATTCCTATGATCGGCCGACGAT
LOC_Os01g02550
OsAffx.8988.1.S1_at--549--731Chr01:836705..836729 (25 bp)
ATGTTGATGGTCTGCGATTGCCTTC
LOC_Os01g02550
OsAffx.8988.1.S1_at--638--3831Chr01:836668..836692 (25 bp)
CTGCGATGATGAACCTATGCCACAT
LOC_Os01g02550
OsAffx.8988.1.S1_at--342--8871Chr01:836662..836686 (25 bp)
TGATGAACCTATGCCACATCTGGTG
LOC_Os01g02550
OsAffx.8988.1.S1_at--1054--4391Chr01:836650..836674 (25 bp)
GCCACATCTGGTGGATGTTGGATTT
LOC_Os01g02550
Target Sequence 
ACCGAGGGTGTGAGATGCAAATTCTACATTTTGATATCAAGCCGCACAACATCCTTCTTGACAGCAAGTTCATTCCAAAA
GTTGCTGATTTTGGCCTTGCCAAACTGTACCCACAGGATAATAGTTTTGTGCCTGTTAGTGCTGCACGAGGAACAATAGG
TTATATTGCTCCTGAGATGATATCTTGGAGCTTTGGTGTCATATCTAGCAAATCTGACGTGTATAGCTTTGGAATGCTTC
TGTTGGAGATGGTTGGAGGGCGAAGGAACTCTAAGCAGGATATGTCGAGCTCAAGCCAAGCGTATTATCCATCATGGGTG
TATAATCAGCTGGCTCAACAAGAGTTGGGTGAGGTGGTTACTAGTGCCTTTAATATGCATGAGCTGGAAAAGAAGTTGTG
TATTGTTGGGCTGCATTGCATTCAGATGAATTCCTATGATCGGCCGACGATGAGTGAGGTCATAGAGATGCTTGAAGGTG
ATGTTGATGGTCTGCGATTGCCTTCTAGGCCATTCTTCTGCGATGATGAACCTATGCCACATCTGGTGGATGTTGGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis