Browse Element(s) Details


Os.45531.1.S1_at

Description gb:CB621884
DB_XREF= gi:29616872
DB_XREF=OSIIEa08A21.r
CLONE=OSIIEa08A21
TID=Os.45531.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (P0463F06.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g025706/11receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02530NANA1+821426..827580retrotransposon protein, putative, unclassified, expressed
LOC_Os01g02540NANA1+831741..835913retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g02550OsAffx.8988.1.S1_at11/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02550Os.34013.2.S1_x_at1/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02560Os.15043.1.S1_at7/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560Os.1977.3.S1_x_at3/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560OsAffx.23090.2.S1_x_at2/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02570Os.45531.1.S1_at6/111+849051..851370receptor-like kinase, putative, expressed
LOC_Os01g02580OsAffx.10882.2.S1_x_at11/111+854759..857385receptor kinase ORK10, putative
LOC_Os01g02590Os.50240.1.S1_at9/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590OsAffx.26617.2.S1_x_at4/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590Os.33796.1.S1_x_at3/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02600Os.1977.3.S1_x_at11/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02600OsAffx.23090.2.S1_x_at1/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02610OsAffx.26617.5.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610OsAffx.26617.2.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.33796.1.S1_x_at4/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.45516.2.S1_x_at1/111+867120..871619Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45531.1.S1_at--1117--3551Chr01:849337..849361 (25 bp)
CATCATGGGTGTATGGGCAGCTAAC
LOC_Os01g02570
Os.45531.1.S1_at--555--5671Chr01:849294..849318 (25 bp)
GACATCAGGTGCTGCTGACATGCAT
LOC_Os01g02570
Os.45531.1.S1_at--354--2751Chr01:849260..849284 (25 bp)
AAGAAGCTGTGCCTTGTTGGATTAT
LOC_Os01g02570
Os.45531.1.S1_at--121--6412Chr01:849212..849236 (25 bp)
GATCGGCCGACAATGAGCGAGACCA
LOC_Os01g02570
Os.45531.1.S1_at--58--831Chr01:849104..849128 (25 bp)
ATGGATTCATACCTTCATTCCTCAG
LOC_Os01g02570
Os.45531.1.S1_at--943--5771Chr01:849059..849083 (25 bp)
GACGATGGCGCAATTGAATTCGCTA
LOC_Os01g02570
Os.45531.1.S1_at--124--571Chr01:848985..849009 (25 bp)
ATCCTGGGATGTCTTTGTCTGTTTT
NONE
Os.45531.1.S1_at--9--7151Chr01:848969..848993 (25 bp)
GTCTGTTTTTCTGAGAACGGTGCTT
NONE
Os.45531.1.S1_at--900--8311NONE
GGCTGTGTTTTGTGGCTGTAAGACT
NONE
Os.45531.1.S1_at--404--2051Chr01:848867..848891 (25 bp)
ACTTACGGTGCCTAGCTCTTGTGAA
NONE
Os.45531.1.S1_at--182--8012Chr05:14758837..14758858 (22 bp)
GGATGGCACCTGACACAATCTAGAT
NONE
Target Sequence 
CATCATGGGTGTATGGGCAGCTAACAGGTGAACAAGTTGGTGAGACATCAGGTGCTGCTGACATGCATGAGCTGCAGAAG
AAGCTGTGCCTTGTTGGATTATGGTGTATTCAGATGAAATCACACGATCGGCCGACAATGAGCGAGACCATAGAGATGCT
CGAAGGGGATGTCAATGCGCTGCAAGTGCCTCCTAGGCCATTCTTTTGTGATGGGGATTTTATGCCTAATGTGATGGATT
CATACCTTCATTCCTCAGAGCTGACTGCCATCTCGGAGGACGATGGCGCAATTGAATTCGCTAGTAACTAGGTTATAATC
GAAGTGTTCATTTGCTATTTTGCTGTGTGGTGATCCTGGGATGTCTTTGTCTGTTTTTCTGAGAACGGTGCTTGGGGCTG
TGTTTTGTGGCTGTAAGACTTACGGTGCCTAGCTCTTGTGAAGGGTGGGATGGCACCTGACACAATCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis