Browse Element(s) Details


Os.15043.1.S1_at

Description gb:AK121074.1
DB_XREF= gi:37990697
TID=Os.15043.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (OJ1212_B09.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061O14, full insert sequence.
FL= gb:AK121074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g025607/11Ser/Thr receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02520NANA1+818146..820809retrotransposon protein, putative, unclassified
LOC_Os01g02530NANA1+821426..827580retrotransposon protein, putative, unclassified, expressed
LOC_Os01g02540NANA1+831741..835913retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g02550OsAffx.8988.1.S1_at11/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02550Os.34013.2.S1_x_at1/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02560Os.15043.1.S1_at7/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560Os.1977.3.S1_x_at3/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560OsAffx.23090.2.S1_x_at2/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02570Os.45531.1.S1_at6/111+849051..851370receptor-like kinase, putative, expressed
LOC_Os01g02580OsAffx.10882.2.S1_x_at11/111+854759..857385receptor kinase ORK10, putative
LOC_Os01g02590Os.50240.1.S1_at9/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590OsAffx.26617.2.S1_x_at4/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590Os.33796.1.S1_x_at3/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02600Os.1977.3.S1_x_at11/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02600OsAffx.23090.2.S1_x_at1/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02610OsAffx.26617.5.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610OsAffx.26617.2.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.33796.1.S1_x_at4/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.45516.2.S1_x_at1/111+867120..871619Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15043.1.S1_at--205--1671Chr01:844039..844063 (25 bp)
AGCCCTTCATTTCGTCTGAAAATCA
LOC_Os01g02560
Os.15043.1.S1_at--1021--7171Chr01:844052..844076 (25 bp)
GTCTGAAAATCATCTTGCGACTTAG
LOC_Os01g02560
Os.15043.1.S1_at--92--10691Chr01:844066..844090 (25 bp)
TTGCGACTTAGATCATGGAAACACA
LOC_Os01g02560
Os.15043.1.S1_at--935--5531Chr01:844083..844537 (25 bp)
GAAACACAATTCCATGGTTTGGAGA
NONE
Os.15043.1.S1_at--602--6371Chr01:844119..844143 (25 bp)
GATCCGTAGCTTGTATGTATGGTGT
LOC_Os01g02560
Os.15043.1.S1_at--749--6911NONE
GTATGGTGTACGATTATTCAACTAT
NONE
Os.15043.1.S1_at--301--131NONE
ATTCAACTATATTGTGCTATCGGAC
NONE
Os.15043.1.S1_at--44--10831NONE
TTGTGCTATCGGACATATGGTATAT
NONE
Os.15043.1.S1_at--1015--10091Chr01:844176..844200 (25 bp)
TATGGTATATGTATTCATGCAATTC
LOC_Os01g02560
Os.15043.1.S1_at--985--3511Chr01:844191..844215 (25 bp)
CATGCAATTCTAATATCCCGTGGAT
LOC_Os01g02560
Os.15043.1.S1_at--539--10151Chr01:844204..844229 (25 bp)
TATCCCGTGGATTTGATTTCAGTGT
LOC_Os01g02560
Target Sequence 
AGCCCTTCATTTCGTCTGAAAATCATCTTGCGACTTAGATCATGGAAACACAATTCCATGGTTTGGAGATATGTTTGNAT
CGATCCGTAGCTTGTATGTATGGTGTACGATTATTCAACTATATTGTGCTATCGGACATATGGTATATGTATTCATGCAA
TTCTAATATCCCGTGGATTTGATTTCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis