Browse Element(s) Details


OsAffx.10882.2.S1_x_at

Description tigr:9629.m00170
TID=OsAffx.10882.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0258011/11receptor kinase ORK10, putative
LOC_Os01g023903/11TAK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02540NANA1+831741..835913retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g02550OsAffx.8988.1.S1_at11/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02550Os.34013.2.S1_x_at1/111+836611..839559Protein kinase domain containing protein, expressed
LOC_Os01g02560Os.15043.1.S1_at7/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560Os.1977.3.S1_x_at3/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560OsAffx.23090.2.S1_x_at2/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02570Os.45531.1.S1_at6/111+849051..851370receptor-like kinase, putative, expressed
LOC_Os01g02580OsAffx.10882.2.S1_x_at11/111+854759..857385receptor kinase ORK10, putative
LOC_Os01g02590Os.50240.1.S1_at9/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590OsAffx.26617.2.S1_x_at4/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590Os.33796.1.S1_x_at3/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02600Os.1977.3.S1_x_at11/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02600OsAffx.23090.2.S1_x_at1/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02610OsAffx.26617.5.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610OsAffx.26617.2.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.33796.1.S1_x_at4/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.45516.2.S1_x_at1/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02629NANA1+880963..884589retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10882.2.S1_x_at--1009--4391Chr01:855305..855329 (25 bp)
GCCACACAATATCCTTCTTGATGTC
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--801--7251Chr01:855239..855263 (25 bp)
GTGCCCCAGGGACCAAAGTTTTGTG
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--512--1211Chr01:855223..855247 (25 bp)
AGTTTTGTGCCGCTCAGTGCTTTAC
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--1113--1371Chr01:855048..855072 (25 bp)
AGACCTACTTCCCATCTTGGGTGTA
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--866--7711Chr01:855030..855054 (25 bp)
GGGTGTATGACCAACTAACTGAGCA
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--286--3832Chr01:854982..855006 (25 bp)
CTGCTGGTACTGTTGCTAACATGCA
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--293--4971Chr01:854937..854961 (25 bp)
GCATAATCGGGCTGCATTGCATCCA
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--1094--6633Chr01:858941..858965 (25 bp)
GTTGTTGGCCTGCAGATGCCTCCAA
NONE
OsAffx.10882.2.S1_x_at--680--592Chr01:854839..854863 (25 bp)
ATGCCTCCAAGACCATTCTTCTGTG
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--767--9571Chr01:854823..854847 (25 bp)
TCTTCTGTGATGATGAACCCGTGTC
LOC_Os01g02580
OsAffx.10882.2.S1_x_at--264--5451Chr01:854809..854833 (25 bp)
GAACCCGTGTCACTTGCGGTGAATT
LOC_Os01g02580
Target Sequence 
GCCACACAATATCCTTCTTGATGTCAACTTTGTTCCAAAGGTTGCTGATTTCGGCCTTGCCAAATTGTGCCCCAGGGACC
AAAGTTTTGTGCCGCTCAGTGCTTTACGGGGAACAATAGGTTATATTGCTCCTGAAATGATATCTCGAAGCTTCGGAATC
ATATCGAGCAAATCCGATGTCTATAGCTTTGGAATGTTGCTACTGGAGATGGCTGGAGGAAGAAGAAACTCAGACATGTA
TGCAGAGAACTCAAATCAGACCTACTTCCCATCTTGGGTGTATGACCAACTAACTGAGCAGCAAGTAGGTGTTGGTGAGA
TACCTGCTGGTACTGTTGCTAACATGCATGAGCTTGAGAGGAAGCTGTGCATAATCGGGCTGCATTGCATCCAGATGAAA
TCTCACGATCGGCCGACGATGAGCGAGGTCATAGAGATGCTTGAAGGTGGCGTTGTTGGCCTGCAGATGCCTCCAAGACC
ATTCTTCTGTGATGATGAACCCGTGTCACTTGCGGTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10882.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis