Browse Element(s) Details


OsAffx.26617.2.S1_x_at

Description gb:NM_184080.1
DB_XREF= gi:34895261
GEN=P0463F06.22
TID=OsAffx.26617.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (P0463F06.22), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0261011/11Protein kinase domain containing protein
LOC_Os01g024104/11Protein kinase domain containing protein, expressed
LOC_Os01g025904/11receptor-like kinase, putative, expressed
LOC_Os01g026804/11TAK33, putative, expressed
LOC_Os01g027801/11TAK33, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02560Os.15043.1.S1_at7/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560Os.1977.3.S1_x_at3/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02560OsAffx.23090.2.S1_x_at2/111+840332..844255Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02570Os.45531.1.S1_at6/111+849051..851370receptor-like kinase, putative, expressed
LOC_Os01g02580OsAffx.10882.2.S1_x_at11/111+854759..857385receptor kinase ORK10, putative
LOC_Os01g02590Os.50240.1.S1_at9/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590OsAffx.26617.2.S1_x_at4/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02590Os.33796.1.S1_x_at3/111+859381..862051receptor-like kinase, putative, expressed
LOC_Os01g02600Os.1977.3.S1_x_at11/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02600OsAffx.23090.2.S1_x_at1/111+862768..865865Ser/Thr receptor-like kinase, putative
LOC_Os01g02610OsAffx.26617.5.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610OsAffx.26617.2.S1_x_at11/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.33796.1.S1_x_at4/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02610Os.45516.2.S1_x_at1/111+867120..871619Protein kinase domain containing protein
LOC_Os01g02629NANA1+880963..884589retrotransposon protein, putative, unclassified
LOC_Os01g02650NANA1+888897..895052retrotransposon protein, putative, unclassified
LOC_Os01g02660NANA1+895668..898960retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26617.2.S1_x_at--15--8832Chr01:869808..869832 (25 bp)
TGATTTCGGCCTCGCTAAACTGTAC
LOC_Os01g02610
OsAffx.26617.2.S1_x_at--1043--4874Chr01:966818..966842 (25 bp)
GCTTTGTGTCAGATAGGGCTTTACG
LOC_Os01g02780
OsAffx.26617.2.S1_x_at--860--271Chr01:869731..869755 (25 bp)
ATATGGCTCCTGAGATGGTTTCCCG
LOC_Os01g02610
OsAffx.26617.2.S1_x_at--291--7871Chr01:869715..869739 (25 bp)
GGTTTCCCGGAGCTTTGGCATCATA
LOC_Os01g02610
OsAffx.26617.2.S1_x_at--419--10871Chr01:869701..869725 (25 bp)
TTGGCATCATATCTGGCAAGTCTGA
LOC_Os01g02610
OsAffx.26617.2.S1_x_at--30--5051Chr01:869624..869648 (25 bp)
GCAGATCCAAATGCAGATTCCAGTG
LOC_Os01g02610
OsAffx.26617.2.S1_x_at--864--9771Chr01:869595..869619 (25 bp)
TAAGGCATACTACCCATCATGGGTT
LOC_Os01g02610
OsAffx.26617.2.S1_x_at--1073--6291Chr01:869540..869564 (25 bp)
GATGAGATATCCAACTTTGCCAACA
LOC_Os01g02610
OsAffx.26617.2.S1_x_at--249--4454Chr01:908879..908903 (25 bp)
GCCTTGTTGGGCTGTGGTGCATTCA
LOC_Os01g02680
OsAffx.26617.2.S1_x_at--130--594Chr01:908733..908757 (25 bp)
ATGCCACCTCCACAAGTCATGGATT
LOC_Os01g02680
OsAffx.26617.2.S1_x_at--1155--7114Chr01:908718..908742 (25 bp)
GTCATGGATTCTTACTTTCACTCCT
LOC_Os01g02680
Target Sequence 
TGATTTCGGCCTCGCTAAACTGTACCCAAGGGACAAGAGCTTTGTGTCAGATAGGGCTTTACGAGGAACAGTGGGTTATA
TGGCTCCTGAGATGGTTTCCCGGAGCTTTGGCATCATATCTGGCAAGTCTGATGTTTACAGTTTTGGAATGTTGCTGCTT
GAGATGGTCGGAGGACGAAGGAATGCAGATCCAAATGCAGATTCCAGTGCAAGTAAGGCATACTACCCATCATGGGTTTA
TGATAAGCTAATAGCAGATCAACAAGTTGATGAGATATCCAACTTTGCCAACATGCATGAGCTAGAGAGGAAGTTGTGCC
TTGTTGGGCTGTGGTGCATTCAGATGAAATCACACGATCGGCCGACGATGAGTGAGGCAATAGAGATGCTCGAAGGGGGT
GTGGATGCGCTGCAAGTGCCTCTGAGACCATTTTTCTGCGATGGGGATGGCATGCCACCTCCACAAGTCATGGATTCTTA
CTTTCACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26617.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis